annotate test-data/strict_qc.json @ 7:4771f8bc8fa4 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 809efd4036a8a0e129cb8bb84402e9904fc83727"
author iuc
date Tue, 30 Nov 2021 09:21:44 +0000
parents d82fc956ab4d
children
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456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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1 {
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d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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2 "schemaVersion": "1.2.0",
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456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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3 "privateMutations": {
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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4 "enabled": true,
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7 },
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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9 "enabled": true,
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11 "scoreBias": 300
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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12 },
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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13 "snpClusters": {
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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14 "enabled": true,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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15 "windowSize": 100,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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16 "clusterCutOff": 1,
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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17 "scoreWeight": 20
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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18 },
456e4dadb905 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
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20 "enabled": true,
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d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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22 },
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24 "enabled": true,
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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25 "ignoredFrameShifts": [
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d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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28 { "geneName": "ORF7a", "codonRange": {"begin": 61, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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29 { "geneName": "ORF7a", "codonRange": {"begin": 62, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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30 { "geneName": "ORF7a", "codonRange": {"begin": 76, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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31 { "geneName": "ORF7a", "codonRange": {"begin": 101, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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32 { "geneName": "ORF7b", "codonRange": {"begin": 41, "end": 44} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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33 { "geneName": "ORF8", "codonRange": {"begin": 107, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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34 { "geneName": "ORF8", "codonRange": {"begin": 119, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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35 { "geneName": "ORF8", "codonRange": {"begin": 120, "end": 122} },
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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36 { "geneName": "ORF8", "codonRange": {"begin": 121, "end": 123} }
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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37 ]
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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38 },
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43 {"geneName": "ORF7a", "codon": 93},
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44 {"geneName": "ORF7b", "codon": 32},
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46 {"geneName": "ORF8", "codon": 17},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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48 {"geneName": "ORF8", "codon": 25},
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49 {"geneName": "ORF8", "codon": 26},
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50 {"geneName": "ORF8", "codon": 58},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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51 {"geneName": "ORF8", "codon": 66},
d82fc956ab4d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit c033be45890203e175aa92a26da0d1510f1d1472"
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52 {"geneName": "ORF8", "codon": 67},
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54 ]
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55 }
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56 }