Mercurial > repos > iuc > nextalign

annotate test-data/genemap.gtf @ 10:6f6a2cb188cf draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit ab4114a60ce5358ef2fbe9c7e8acbedd40c545d9"
author iuc
date Thu, 27 Jan 2022 14:05:14 +0000
parents d1dd7d1b07f6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
1 # Gene map (genome annotation) of SARS-CoV-2 in GTF format.
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
2 # For gene map purpses we only need some of the columns. We substitute unused values with "." as per GTF spec.
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
3 # See GTF format reference at https://www.ensembl.org/info/website/upload/gff.html
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
4 # seqname source feature start end score strand frame attribute
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
5 . . gene 26245 26472 . + . gene_name "E"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
6 . . gene 26523 27191 . + . gene_name "M"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
7 . . gene 28274 29533 . + . gene_name "N"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
8 . . gene 29558 29674 . + . gene_name "ORF10"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
9 . . gene 28734 28955 . + . gene_name "ORF14"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
10 . . gene 266 13468 . + . gene_name "ORF1a"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
11 . . gene 13468 21555 . + . gene_name "ORF1b"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
12 . . gene 25393 26220 . + . gene_name "ORF3a"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
13 . . gene 27202 27387 . + . gene_name "ORF6"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
14 . . gene 27394 27759 . + . gene_name "ORF7a"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
15 . . gene 27756 27887 . + . gene_name "ORF7b"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
16 . . gene 27894 28259 . + . gene_name "ORF8"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
17 . . gene 28284 28577 . + . gene_name "ORF9b"
d1dd7d1b07f6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
iuc
parents:
diff changeset
18 . . gene 21563 25384 . + . gene_name "S"