comparison macros.xml @ 14:4d93e708218c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda

13:e5ed60c823a7

<macros>
    <!-- same version number is used for nextclade and nextalign releases, even though they are distinct tools -->
    <token name="@TOOL_VERSION@">1.11.0</token>
    <xml name="citations">
        <citations>
            <citation type="bibtex">@online{nextclade,
                title={nextclade},
                year = 2021,

    #else:
        ln -f -s '$reference_source.ref_file.fields.path' reference.fa &&
    #end if
]]></token>

    <!--
        inputs
    -->

    <xml name="reference">

14:4d93e708218c

<macros>
    <!-- same version number is used for nextclade and nextalign releases, even though they are distinct tools -->
    <token name="@TOOL_VERSION@">2.4.0</token>
    <xml name="citations">
        <citations>
            <citation type="bibtex">@online{nextclade,
                title={nextclade},
                year = 2021,

    #else:
        ln -f -s '$reference_source.ref_file.fields.path' reference.fa &&
    #end if
]]></token>

    <token name="@QUERY_FASTA@"><![CDATA[
    #if $input_fasta.is_of_type('fasta.gz')
        #set $query = 'query.fa.gz'
    #else
        #set $query = 'query.fa'
    #end if
    ln -s '$input_fasta' $query &&    
]]></token>
    <!--
        inputs
    -->

    <xml name="reference">