Mercurial > repos > iuc > nextalign
comparison test-data/genemap.gtf @ 0:d1dd7d1b07f6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 66df2726d24d9f37eaaa31fea967a0553cc5c3e6"
| author | iuc |
|---|---|
| date | Thu, 08 Apr 2021 07:52:26 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:d1dd7d1b07f6 |
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| 1 # Gene map (genome annotation) of SARS-CoV-2 in GTF format. | |
| 2 # For gene map purpses we only need some of the columns. We substitute unused values with "." as per GTF spec. | |
| 3 # See GTF format reference at https://www.ensembl.org/info/website/upload/gff.html | |
| 4 # seqname source feature start end score strand frame attribute | |
| 5 . . gene 26245 26472 . + . gene_name "E" | |
| 6 . . gene 26523 27191 . + . gene_name "M" | |
| 7 . . gene 28274 29533 . + . gene_name "N" | |
| 8 . . gene 29558 29674 . + . gene_name "ORF10" | |
| 9 . . gene 28734 28955 . + . gene_name "ORF14" | |
| 10 . . gene 266 13468 . + . gene_name "ORF1a" | |
| 11 . . gene 13468 21555 . + . gene_name "ORF1b" | |
| 12 . . gene 25393 26220 . + . gene_name "ORF3a" | |
| 13 . . gene 27202 27387 . + . gene_name "ORF6" | |
| 14 . . gene 27394 27759 . + . gene_name "ORF7a" | |
| 15 . . gene 27756 27887 . + . gene_name "ORF7b" | |
| 16 . . gene 27894 28259 . + . gene_name "ORF8" | |
| 17 . . gene 28284 28577 . + . gene_name "ORF9b" | |
| 18 . . gene 21563 25384 . + . gene_name "S" |