Mercurial > repos > iuc > nextclade

annotate nextclade.loc.sample @ 20:4f6349228462 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit bc6ba57599c6516bd728e7311ba0a53188622edf
author iuc
date Thu, 14 Mar 2024 13:26:08 +0000
parents 07ab9bd68a02
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
17
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
1 # this is a tab separated file describing the location of nextclade databases used for the
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
2 # nextclade viral lineage typing tool
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
3 #
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
4 # the columns are:
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
5 # value database_name description min_nextclade_version date path
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
6 #
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
7 # min_nextclade_version is the minimum pangolin tool major version that is needed to read the nextclade data
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
8 #
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
9 # the database_name refers to which dataset names that, in general, align with species names. for more details see the output of "nextclade dataset list"
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
10 #
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
11 # for example
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
parents:
diff changeset
12 #sars-cov-2_2022-06-14T12:00:00Z sars-cov-2 SARS-CoV-2 1.10.0 2022-06-14T12:00:00 /srv/galaxy/tool-data/nextclade/sars-cov-2_2022-06-14T12-00-00Z