Mercurial > repos > iuc > nextclade
comparison nextclade.xml @ 8:56b1a13d9680 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 9e5f2fc04f61230208adf2e321ce84cb66e86006"
| author | iuc |
|---|---|
| date | Wed, 13 Oct 2021 16:16:08 +0000 |
| parents | f6db3ce6ed1c |
| children | 64be7ff9b97b |
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| 7:f6db3ce6ed1c | 8:56b1a13d9680 |
|---|---|
| 119 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> | 119 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> |
| 120 <param name="outputs" value="report_tsv" /> | 120 <param name="outputs" value="report_tsv" /> |
| 121 <param name="organism" value="sars-cov-2" /> | 121 <param name="organism" value="sars-cov-2" /> |
| 122 <output name="report_tsv"> | 122 <output name="report_tsv"> |
| 123 <assert_contents> | 123 <assert_contents> |
| 124 <has_n_columns n="52" /> | 124 <has_n_columns n="53" /> |
| 125 <has_text text="20A" /> | 125 <has_text text="20A" /> |
| 126 </assert_contents> | 126 </assert_contents> |
| 127 </output> | 127 </output> |
| 128 </test> | 128 </test> |
| 129 <test expect_num_outputs="3"> | 129 <test expect_num_outputs="3"> |
| 130 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> | 130 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> |
| 131 <param name="outputs" value="report_tsv,report_json,output_tree" /> | 131 <param name="outputs" value="report_tsv,report_json,output_tree" /> |
| 132 <param name="organism" value="sars-cov-2" /> | 132 <param name="organism" value="sars-cov-2" /> |
| 133 <output name="report_tsv"> | 133 <output name="report_tsv"> |
| 134 <assert_contents> | 134 <assert_contents> |
| 135 <has_n_columns n="52" /> | 135 <has_n_columns n="53" /> |
| 136 <has_text text="20A" /> | 136 <has_text text="20A" /> |
| 137 </assert_contents> | 137 </assert_contents> |
| 138 </output> | 138 </output> |
| 139 <output name="report_json"> | 139 <output name="report_json"> |
| 140 <assert_contents> | 140 <assert_contents> |
| 155 <param name="advanced_options" value="yes" /> | 155 <param name="advanced_options" value="yes" /> |
| 156 <param name="input_qc_config" value="strict_qc.json" ftype="json" /> | 156 <param name="input_qc_config" value="strict_qc.json" ftype="json" /> |
| 157 </conditional> | 157 </conditional> |
| 158 <output name="report_tsv"> | 158 <output name="report_tsv"> |
| 159 <assert_contents> | 159 <assert_contents> |
| 160 <has_n_columns n="52" /> | 160 <has_n_columns n="53" /> |
| 161 <has_text text="mediocre" /> | 161 <has_text text="mediocre" /> |
| 162 </assert_contents> | 162 </assert_contents> |
| 163 </output> | 163 </output> |
| 164 </test> | 164 </test> |
| 165 </tests> | 165 </tests> |