Mercurial > repos > iuc > nextclade
comparison nextclade.xml @ 16:9e10ba792be2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 8946fa636bdd03168eb786d052b8f18c9cae2693"
| author | iuc |
|---|---|
| date | Mon, 21 Mar 2022 22:10:16 +0000 |
| parents | b60593baff7d |
| children | 07ab9bd68a02 |
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| 15:daddf188c13f | 16:9e10ba792be2 |
|---|---|
| 114 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> | 114 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> |
| 115 <param name="outputs" value="report_tsv" /> | 115 <param name="outputs" value="report_tsv" /> |
| 116 <param name="organism" value="sars-cov-2" /> | 116 <param name="organism" value="sars-cov-2" /> |
| 117 <output name="report_tsv"> | 117 <output name="report_tsv"> |
| 118 <assert_contents> | 118 <assert_contents> |
| 119 <has_n_columns n="62" /> | 119 <has_n_columns n="63" /> |
| 120 <has_text text="20A" /> | 120 <has_text text="20A" /> |
| 121 </assert_contents> | 121 </assert_contents> |
| 122 </output> | 122 </output> |
| 123 </test> | 123 </test> |
| 124 <test expect_num_outputs="3"> | 124 <test expect_num_outputs="3"> |
| 125 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> | 125 <param name="input_fasta" value="sarscov2_1.fasta" ftype="fasta" /> |
| 126 <param name="outputs" value="report_tsv,report_json,output_tree" /> | 126 <param name="outputs" value="report_tsv,report_json,output_tree" /> |
| 127 <param name="organism" value="sars-cov-2" /> | 127 <param name="organism" value="sars-cov-2" /> |
| 128 <output name="report_tsv"> | 128 <output name="report_tsv"> |
| 129 <assert_contents> | 129 <assert_contents> |
| 130 <has_n_columns n="62" /> | 130 <has_n_columns n="63" /> |
| 131 <has_text text="20A" /> | 131 <has_text text="20A" /> |
| 132 </assert_contents> | 132 </assert_contents> |
| 133 </output> | 133 </output> |
| 134 <output name="report_json"> | 134 <output name="report_json"> |
| 135 <assert_contents> | 135 <assert_contents> |
| 150 <param name="advanced_options" value="yes" /> | 150 <param name="advanced_options" value="yes" /> |
| 151 <param name="input_qc_config" value="strict_qc.json" ftype="json" /> | 151 <param name="input_qc_config" value="strict_qc.json" ftype="json" /> |
| 152 </conditional> | 152 </conditional> |
| 153 <output name="report_tsv"> | 153 <output name="report_tsv"> |
| 154 <assert_contents> | 154 <assert_contents> |
| 155 <has_n_columns n="62" /> | 155 <has_n_columns n="63" /> |
| 156 <has_text text="mediocre" /> | 156 <has_text text="mediocre" /> |
| 157 </assert_contents> | 157 </assert_contents> |
| 158 </output> | 158 </output> |
| 159 </test> | 159 </test> |
| 160 <test expect_num_outputs="2"> | 160 <test expect_num_outputs="2"> |
| 165 <param name="advanced_options" value="yes" /> | 165 <param name="advanced_options" value="yes" /> |
| 166 <param name="include_reference" value="true" /> | 166 <param name="include_reference" value="true" /> |
| 167 </conditional> | 167 </conditional> |
| 168 <output name="report_tsv"> | 168 <output name="report_tsv"> |
| 169 <assert_contents> | 169 <assert_contents> |
| 170 <has_n_columns n="62" /> | 170 <has_n_columns n="63" /> |
| 171 <has_text text="mediocre" /> | 171 <has_text text="mediocre" /> |
| 172 </assert_contents> | 172 </assert_contents> |
| 173 </output> | 173 </output> |
| 174 <output name="output_fasta" value="output_alignment.fasta" ftype="fasta" /> | 174 <output name="output_fasta" value="output_alignment.fasta" ftype="fasta" /> |
| 175 </test> | 175 </test> |