Mercurial > repos > iuc > nextclade
diff test-data/genemap.gtf @ 0:615f484bdb4a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 52ba8fbf88f6c92b2811ace30ebd091b0800057a"
| author | iuc |
|---|---|
| date | Mon, 26 Apr 2021 19:10:28 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genemap.gtf Mon Apr 26 19:10:28 2021 +0000 @@ -0,0 +1,18 @@ +# Gene map (genome annotation) of SARS-CoV-2 in GTF format. +# For gene map purpses we only need some of the columns. We substitute unused values with "." as per GTF spec. +# See GTF format reference at https://www.ensembl.org/info/website/upload/gff.html +# seqname source feature start end score strand frame attribute +. . gene 26245 26472 . + . gene_name "E" +. . gene 26523 27191 . + . gene_name "M" +. . gene 28274 29533 . + . gene_name "N" +. . gene 29558 29674 . + . gene_name "ORF10" +. . gene 28734 28955 . + . gene_name "ORF14" +. . gene 266 13468 . + . gene_name "ORF1a" +. . gene 13468 21555 . + . gene_name "ORF1b" +. . gene 25393 26220 . + . gene_name "ORF3a" +. . gene 27202 27387 . + . gene_name "ORF6" +. . gene 27394 27759 . + . gene_name "ORF7a" +. . gene 27756 27887 . + . gene_name "ORF7b" +. . gene 27894 28259 . + . gene_name "ORF8" +. . gene 28284 28577 . + . gene_name "ORF9b" +. . gene 21563 25384 . + . gene_name "S"