# HG changeset patch
# User iuc
# Date 1658914442 0
# Node ID bb51c75a0157ab66ca2439b1ad83596b027733bf
# Parent  95e4757d8da7107041b4391e317083858521a20e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ngmlr commit 4a774c70198144dda9f63d4c4de600aa5c866b4c

diff -r 95e4757d8da7 -r bb51c75a0157 ngmlr.xml
--- a/ngmlr.xml	Thu Oct 29 15:43:54 2020 +0000
+++ b/ngmlr.xml	Wed Jul 27 09:34:02 2022 +0000
@@ -1,5 +1,8 @@
 <?xml version="1.0"?>
 <tool id="ngmlr" name="CoNvex" version="@VERSION@">
+    <xrefs>
+        <xref type="bio.tools">ngmlr</xref>
+    </xrefs>
     <macros>
         <token name="@VERSION@">0.2.7</token>
         <xml name="rg_validator">
@@ -148,23 +151,23 @@
         <test>
             <param name="reference" value="ngmlr-ref1.fa" />
             <param name="query" value="ngmlr-in1.fa" />
-            <output name="alignments" file="ngmlr-out1.sam" lines_diff="2" />
+            <output name="alignments" file="ngmlr-out1.sam" lines_diff="2" sort="true" />
         </test>
         <test>
             <param name="reference" value="ngmlr-ref2.fa" />
             <param name="query" value="ngmlr-in2.fa" />
-            <output name="alignments" file="ngmlr-out2.sam" lines_diff="2" />
+            <output name="alignments" file="ngmlr-out2.sam" lines_diff="2" sort="true" />
         </test>
         <test>
             <param name="reference" value="ngmlr-ref3.fa.gz" />
             <param name="query" value="ngmlr-in3.fa.gz" />
             <param name="min_residues" value="0.01" />
-            <output name="alignments" file="ngmlr-out3.sam" lines_diff="2" />
+            <output name="alignments" file="ngmlr-out3.sam" lines_diff="2" sort="true" />
         </test>
         <test>
             <param name="reference" value="ngmlr-ref3.fa.gz" />
             <param name="query" value="ngmlr-in3.fa.gz" />
-            <output name="alignments" file="ngmlr-out4.sam" lines_diff="2" />
+            <output name="alignments" file="ngmlr-out4.sam" lines_diff="2" sort="true" />
         </test>
     </tests>
     <help>