# HG changeset patch
# User iuc
# Date 1710233450 0
# Node ID cef64c36c89ec7fbc604a77cf0515de822aa64bb
# Parent 45210df786b9235579a42bf21d18a19e4f9152d4
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nonpareil commit 0b535bf15f4bb0110f599c1af9b1dc1c66302899
diff -r 45210df786b9 -r cef64c36c89e README.rst
--- a/README.rst Wed Jul 27 09:26:36 2022 +0000
+++ b/README.rst Tue Mar 12 08:50:50 2024 +0000
@@ -1,29 +1,7 @@
Nonpareil memory usage
-=======================
+======================
By default, this tool is configured to limit the memory consumption to 1024 Mib.
-Ideally this value should be larger than the sequences to analyze (discarding non-sequence elements like headers or quality). This is particularly important when running in multiple cores. This value is approximated. Maximum value in this version: 4194303.
-
-You can set the NONPAREIL_MAX_MEMORY environmental variable in the destination section of the job_conf.xml file:
-
-```
-
-
-
-
-
-
-
-
-
-
-
- 1024
-
-
-
-```
-
-
-
+Ideally, this value should be larger than the sequences to analyze (discarding non-sequence elements like headers or quality). This is particularly important when running in multiple cores.
+This value is approximated. Maximum value in this version: 4194303.
diff -r 45210df786b9 -r cef64c36c89e macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Tue Mar 12 08:50:50 2024 +0000
@@ -0,0 +1,14 @@
+
+
+
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+ nonpareil
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+
+ nonpareil
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+ 3.1.1
+
\ No newline at end of file
diff -r 45210df786b9 -r cef64c36c89e nonpareil.xml
--- a/nonpareil.xml Wed Jul 27 09:26:36 2022 +0000
+++ b/nonpareil.xml Tue Mar 12 08:50:50 2024 +0000
@@ -1,11 +1,10 @@
to estimate average coverage and generate Nonpareil curves
- 3.1.1
+ macros.xml
-
- nonpareil
-
+
+
nonpareil -V