Mercurial > repos > iuc > obi_sort
diff test-data/output_obitab.txt @ 1:0de27b538106 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/obitools commit b3426aed6615742d96dfb8f7346a9e0d4e391a99
| author | iuc |
|---|---|
| date | Fri, 12 Oct 2018 06:23:57 -0400 |
| parents | aca6a8c9cf83 |
| children |
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--- a/test-data/output_obitab.txt Wed Apr 12 17:38:00 2017 -0400 +++ b/test-data/output_obitab.txt Fri Oct 12 06:23:57 2018 -0400 @@ -1,59 +1,59 @@ -id count sample:13a_F730603 sample:15a_F730814 sample:26a_F040644 sample:29a_F260619 obiclean_head obiclean_headcount obiclean_internalcount obiclean_samplecount obiclean_singletoncount seq_length seq_rank -HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP 64 0 0 64 0 True 1 0 1 0 99 5 -HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB 61 0 31 0 30 True 2 0 2 0 100 4 -HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB 46 46 0 0 0 True 1 0 1 0 100 8 -HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB 7 0 0 0 7 True 0 0 1 1 4 16 -HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP 3 0 0 0 3 True 0 0 1 1 100 6 -HELIUM_000100422_612GNAAXX:7:29:15520:18035#0/2_CONS_SUB_SUB 2 0 0 0 2 True 0 0 1 1 100 7 -HELIUM_000100422_612GNAAXX:7:115:17402:4174#0/2_CONS_SUB_SUB_CMP 2 0 1 0 1 False 0 2 2 0 100 13 -HELIUM_000100422_612GNAAXX:7:38:10813:16867#0/2_CONS_SUB_SUB 2 0 0 2 0 False 0 1 1 0 99 15 -HELIUM_000100422_612GNAAXX:7:70:11798:2668#0/2_CONS_SUB_SUB 2 0 2 0 0 True 0 0 1 1 100 20 -HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 True 0 0 1 1 100 1 -HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 100 2 -HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 100 3 -HELIUM_000100422_612GNAAXX:7:24:16230:12703#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 False 0 1 1 0 100 9 -HELIUM_000100422_612GNAAXX:7:4:4214:9434#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 100 10 -HELIUM_000100422_612GNAAXX:7:13:6954:13039#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 99 11 -HELIUM_000100422_612GNAAXX:7:38:6201:12003#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 99 12 -HELIUM_000100422_612GNAAXX:7:78:7151:19928#0/2_CONS_SUB_SUB 1 0 0 1 0 True 0 0 1 1 99 14 -HELIUM_000100422_612GNAAXX:7:16:16357:19948#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 99 17 -HELIUM_000100422_612GNAAXX:7:107:3570:18147#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 100 18 -HELIUM_000100422_612GNAAXX:7:114:4511:17596#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 True 0 0 1 1 100 19 -HELIUM_000100422_612GNAAXX:7:29:18416:16620#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 True 0 0 1 1 100 21 -HELIUM_000100422_612GNAAXX:7:120:1900:13295#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 True 0 0 1 1 100 22 -HELIUM_000100422_612GNAAXX:7:76:10822:18722#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 99 23 -HELIUM_000100422_612GNAAXX:7:76:8491:8900#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 True 0 0 1 1 100 24 -HELIUM_000100422_612GNAAXX:7:9:10358:4089#0/2_CONS_SUB_SUB_CMP 1 1 0 0 0 True 0 0 1 1 100 25 -HELIUM_000100422_612GNAAXX:7:59:11971:12063#0/2_CONS_SUB_SUB 1 0 0 0 1 False 0 1 1 0 100 26 -HELIUM_000100422_612GNAAXX:7:111:19168:18517#0/2_CONS_SUB_SUB 1 0 1 0 0 False 0 1 1 0 100 27 -HELIUM_000100422_612GNAAXX:7:41:9316:2256#0/2_CONS_SUB_SUB 1 0 0 0 1 False 0 1 1 0 100 28 -HELIUM_000100422_612GNAAXX:7:33:9900:9541#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 100 29 -HELIUM_000100422_612GNAAXX:7:95:1688:9598#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 99 30 -HELIUM_000100422_612GNAAXX:7:55:16528:11418#0/2_CONS_SUB_SUB 1 1 0 0 0 True 0 0 1 1 100 31 -HELIUM_000100422_612GNAAXX:7:19:6313:16567#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 99 32 -HELIUM_000100422_612GNAAXX:7:111:8478:1127#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 99 33 -HELIUM_000100422_612GNAAXX:7:81:15726:2345#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 99 34 -HELIUM_000100422_612GNAAXX:7:7:11110:17924#0/2_CONS_SUB_SUB 1 0 1 0 0 True 0 0 1 1 100 35 -HELIUM_000100422_612GNAAXX:7:89:9710:20652#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 99 36 -HELIUM_000100422_612GNAAXX:7:71:17473:7401#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 False 0 1 1 0 100 37 -HELIUM_000100422_612GNAAXX:7:115:3625:10051#0/2_CONS_SUB_SUB 1 1 0 0 0 True 0 0 1 1 5 38 -HELIUM_000100422_612GNAAXX:7:99:8183:13912#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 100 39 -HELIUM_000100422_612GNAAXX:7:22:1798:3790#0/2_CONS_SUB_SUB_CMP 1 1 0 0 0 False 0 1 1 0 100 40 -HELIUM_000100422_612GNAAXX:7:115:14354:10118#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 99 41 -HELIUM_000100422_612GNAAXX:7:103:3594:15996#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 100 42 -HELIUM_000100422_612GNAAXX:7:105:14135:6905#0/2_CONS_SUB_SUB 1 0 0 0 1 True 0 0 1 1 100 43 -HELIUM_000100422_612GNAAXX:7:76:18268:14980#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 100 44 -HELIUM_000100422_612GNAAXX:7:25:7789:3090#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 100 45 -HELIUM_000100422_612GNAAXX:7:42:19757:3800#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 False 0 1 1 0 99 46 -HELIUM_000100422_612GNAAXX:7:116:14244:17926#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 99 47 -HELIUM_000100422_612GNAAXX:7:72:12959:5736#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 99 48 -HELIUM_000100422_612GNAAXX:7:7:15538:8325#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 99 49 -HELIUM_000100422_612GNAAXX:7:120:16005:7955#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 98 50 -HELIUM_000100422_612GNAAXX:7:10:9237:10532#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 100 51 -HELIUM_000100422_612GNAAXX:7:7:11998:4462#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 99 52 -HELIUM_000100422_612GNAAXX:7:111:18277:17779#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 99 53 -HELIUM_000100422_612GNAAXX:7:3:17077:6562#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 False 0 1 1 0 100 54 -HELIUM_000100422_612GNAAXX:7:19:4311:13343#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 99 55 -HELIUM_000100422_612GNAAXX:7:30:1800:7833#0/2_CONS_SUB_SUB 1 0 1 0 0 True 0 0 1 1 100 56 -HELIUM_000100422_612GNAAXX:7:108:9222:18258#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 100 57 -HELIUM_000100422_612GNAAXX:7:38:3005:20881#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 99 58 +id count sample:13a_F730603 sample:15a_F730814 sample:26a_F040644 sample:29a_F260619 obiclean_head obiclean_headcount obiclean_internalcount obiclean_samplecount obiclean_singletoncount obiclean_status:13a_F730603 obiclean_status:15a_F730814 obiclean_status:26a_F040644 obiclean_status:29a_F260619 seq_length seq_rank +HELIUM_000100422_612GNAAXX:7:57:18459:16145#0/2_CONS_SUB_SUB_CMP 64 0 0 64 0 True 1 0 1 0 NA NA h NA 99 5 +HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/2_CONS_SUB_SUB 61 0 31 0 30 True 2 0 2 0 NA h NA h 100 4 +HELIUM_000100422_612GNAAXX:7:6:9274:14951#0/2_CONS_SUB_SUB 46 46 0 0 0 True 1 0 1 0 h NA NA NA 100 8 +HELIUM_000100422_612GNAAXX:7:13:5742:9859#0/2_CONS_SUB_SUB 7 0 0 0 7 True 0 0 1 1 NA NA NA s 4 16 +HELIUM_000100422_612GNAAXX:7:89:10281:5930#0/2_CONS_SUB_SUB_CMP 3 0 0 0 3 True 0 0 1 1 NA NA NA s 100 6 +HELIUM_000100422_612GNAAXX:7:29:15520:18035#0/2_CONS_SUB_SUB 2 0 0 0 2 True 0 0 1 1 NA NA NA s 100 7 +HELIUM_000100422_612GNAAXX:7:115:17402:4174#0/2_CONS_SUB_SUB_CMP 2 0 1 0 1 False 0 2 2 0 NA i NA i 100 13 +HELIUM_000100422_612GNAAXX:7:38:10813:16867#0/2_CONS_SUB_SUB 2 0 0 2 0 False 0 1 1 0 NA NA i NA 99 15 +HELIUM_000100422_612GNAAXX:7:70:11798:2668#0/2_CONS_SUB_SUB 2 0 2 0 0 True 0 0 1 1 NA s NA NA 100 20 +HELIUM_000100422_612GNAAXX:7:119:14871:19157#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 True 0 0 1 1 NA NA NA s 100 1 +HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 NA NA NA i 100 2 +HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 NA NA NA i 100 3 +HELIUM_000100422_612GNAAXX:7:24:16230:12703#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 False 0 1 1 0 NA i NA NA 100 9 +HELIUM_000100422_612GNAAXX:7:4:4214:9434#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 i NA NA NA 100 10 +HELIUM_000100422_612GNAAXX:7:13:6954:13039#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 NA NA s NA 99 11 +HELIUM_000100422_612GNAAXX:7:38:6201:12003#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 NA NA s NA 99 12 +HELIUM_000100422_612GNAAXX:7:78:7151:19928#0/2_CONS_SUB_SUB 1 0 0 1 0 True 0 0 1 1 NA NA s NA 99 14 +HELIUM_000100422_612GNAAXX:7:16:16357:19948#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 17 +HELIUM_000100422_612GNAAXX:7:107:3570:18147#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 NA NA NA i 100 18 +HELIUM_000100422_612GNAAXX:7:114:4511:17596#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 True 0 0 1 1 NA NA NA s 100 19 +HELIUM_000100422_612GNAAXX:7:29:18416:16620#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 True 0 0 1 1 NA NA NA s 100 21 +HELIUM_000100422_612GNAAXX:7:120:1900:13295#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 True 0 0 1 1 NA s NA NA 100 22 +HELIUM_000100422_612GNAAXX:7:76:10822:18722#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 23 +HELIUM_000100422_612GNAAXX:7:76:8491:8900#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 True 0 0 1 1 NA s NA NA 100 24 +HELIUM_000100422_612GNAAXX:7:9:10358:4089#0/2_CONS_SUB_SUB_CMP 1 1 0 0 0 True 0 0 1 1 s NA NA NA 100 25 +HELIUM_000100422_612GNAAXX:7:59:11971:12063#0/2_CONS_SUB_SUB 1 0 0 0 1 False 0 1 1 0 NA NA NA i 100 26 +HELIUM_000100422_612GNAAXX:7:111:19168:18517#0/2_CONS_SUB_SUB 1 0 1 0 0 False 0 1 1 0 NA i NA NA 100 27 +HELIUM_000100422_612GNAAXX:7:41:9316:2256#0/2_CONS_SUB_SUB 1 0 0 0 1 False 0 1 1 0 NA NA NA i 100 28 +HELIUM_000100422_612GNAAXX:7:33:9900:9541#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 i NA NA NA 100 29 +HELIUM_000100422_612GNAAXX:7:95:1688:9598#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 NA NA s NA 99 30 +HELIUM_000100422_612GNAAXX:7:55:16528:11418#0/2_CONS_SUB_SUB 1 1 0 0 0 True 0 0 1 1 s NA NA NA 100 31 +HELIUM_000100422_612GNAAXX:7:19:6313:16567#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 32 +HELIUM_000100422_612GNAAXX:7:111:8478:1127#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 NA NA s NA 99 33 +HELIUM_000100422_612GNAAXX:7:81:15726:2345#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 NA NA s NA 99 34 +HELIUM_000100422_612GNAAXX:7:7:11110:17924#0/2_CONS_SUB_SUB 1 0 1 0 0 True 0 0 1 1 NA s NA NA 100 35 +HELIUM_000100422_612GNAAXX:7:89:9710:20652#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 36 +HELIUM_000100422_612GNAAXX:7:71:17473:7401#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 False 0 1 1 0 NA i NA NA 100 37 +HELIUM_000100422_612GNAAXX:7:115:3625:10051#0/2_CONS_SUB_SUB 1 1 0 0 0 True 0 0 1 1 s NA NA NA 5 38 +HELIUM_000100422_612GNAAXX:7:99:8183:13912#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 i NA NA NA 100 39 +HELIUM_000100422_612GNAAXX:7:22:1798:3790#0/2_CONS_SUB_SUB_CMP 1 1 0 0 0 False 0 1 1 0 i NA NA NA 100 40 +HELIUM_000100422_612GNAAXX:7:115:14354:10118#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 41 +HELIUM_000100422_612GNAAXX:7:103:3594:15996#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 i NA NA NA 100 42 +HELIUM_000100422_612GNAAXX:7:105:14135:6905#0/2_CONS_SUB_SUB 1 0 0 0 1 True 0 0 1 1 NA NA NA s 100 43 +HELIUM_000100422_612GNAAXX:7:76:18268:14980#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 NA NA NA i 100 44 +HELIUM_000100422_612GNAAXX:7:25:7789:3090#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 NA NA NA i 100 45 +HELIUM_000100422_612GNAAXX:7:42:19757:3800#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 False 0 1 1 0 NA i NA NA 99 46 +HELIUM_000100422_612GNAAXX:7:116:14244:17926#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 47 +HELIUM_000100422_612GNAAXX:7:72:12959:5736#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 48 +HELIUM_000100422_612GNAAXX:7:7:15538:8325#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 NA NA s NA 99 49 +HELIUM_000100422_612GNAAXX:7:120:16005:7955#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 NA NA i NA 98 50 +HELIUM_000100422_612GNAAXX:7:10:9237:10532#0/2_CONS_SUB_SUB_CMP 1 0 0 0 1 False 0 1 1 0 NA NA NA i 100 51 +HELIUM_000100422_612GNAAXX:7:7:11998:4462#0/2_CONS_SUB_SUB 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 52 +HELIUM_000100422_612GNAAXX:7:111:18277:17779#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 True 0 0 1 1 NA NA s NA 99 53 +HELIUM_000100422_612GNAAXX:7:3:17077:6562#0/2_CONS_SUB_SUB_CMP 1 0 1 0 0 False 0 1 1 0 NA i NA NA 100 54 +HELIUM_000100422_612GNAAXX:7:19:4311:13343#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 55 +HELIUM_000100422_612GNAAXX:7:30:1800:7833#0/2_CONS_SUB_SUB 1 0 1 0 0 True 0 0 1 1 NA s NA NA 100 56 +HELIUM_000100422_612GNAAXX:7:108:9222:18258#0/2_CONS_SUB_SUB 1 1 0 0 0 False 0 1 1 0 i NA NA NA 100 57 +HELIUM_000100422_612GNAAXX:7:38:3005:20881#0/2_CONS_SUB_SUB_CMP 1 0 0 1 0 False 0 1 1 0 NA NA i NA 99 58