Mercurial > repos > iuc > obi_sort
view obisort.xml @ 2:12b9e285ca1c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/obitools commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author | iuc |
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date | Thu, 28 Nov 2019 15:51:52 -0500 |
parents | 0de27b538106 |
children | e614dcabd870 |
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<tool id="obi_sort" name="obisort" version="@TOOL_VERSION@"> <description>sorts sequence records according to the value of a given attribute, which can be either numeric or alphanumeric</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <expand macro="stdio"/> <command> <![CDATA[ obisort -k '$key' ${reverse} '$input' > '$output' ]]> </command> <inputs> <param name="input" type="data" format="fastq,fasta,txt,tabular" label="Input sequences file" /> <param name="key" type="text" label="key" /> <param name="reverse" type="boolean" checked="false" truevalue="-r" falsevalue="" label="sorts in reverse order?" /> <param name="out_format" type="select" label="Output data type"> <option value="fasta">fasta</option> <option value="fastq">fastq</option> </param> </inputs> <outputs> <data format="fastq" name="output" label="output with ${tool.name} on ${on_string}" > <change_format> <when input="out_format" value="fasta" format="fasta" /> </change_format> </data> </outputs> <tests> <test> <param name="input" value="output_obiclean_advanced.fasta" /> <param name="key" value="count"/> <param name="reverse" value="False"/> <param name="out_format" value="fasta"/> <output name="output" file="output_obisort.fasta" ftype="fasta"/> </test> <test> <param name="input" value="output_obiclean_advanced.fasta" /> <param name="key" value="count"/> <param name="reverse" value="True"/> <param name="out_format" value="fastq"/> <output name="output" file="output_obisort.fastq" ftype="fastq"/> </test> </tests> <help><![CDATA[ .. class:: infomark **What it does** obisort sorts sequence records according to the value of a given attribute, which can be either numeric or alphanumeric. @OBITOOLS_LINK@ ]]> </help> <expand macro="citation" /> </tool>