view test-data/output_ngsfilter_unidentified.fastq @ 0:aca6a8c9cf83 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/obitools commit e1031e4c94b25d1ed535bf221764ab801b710ab2

@HELIUM_000100422_612GNAAXX:7:1:9007:3289#0/2_CONS_SUB_SUB_CMP error=Cannot assign sequence to a sample; forward_score=72.0; forward_tag=atctctc; reverse_tag=atctctc; forward_match=ttagataccccactatgc; forward_primer=ttagataccccactatgc; reverse_score=72.0; status=full; direction=reverse; reverse_match=tagaacaggctcctctag; reverse_primer=tagaacaggctcctctag; ali_length=62; seq_ab_match=60; sminR=40.0; seq_b_mismatch=0; seq_a_mismatch=2; tail_quality=67.0; seq_b_deletion=0; mid_quality=78.5671641791; seq_a_deletion=0; seq_b_single=46; score=231.83380127; seq_a_insertion=0; mode=alignment; seq_length_ori=154; head_quality=67.0; avg_quality=77.0649350649; sminL=40.0; seq_a_single=46; score_norm=3.7392548592; seq_b_insertion=0; 
ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaatagcttaaaactcaaaggacttggcggtgctttataccctt
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ddddddddddddddcddbd~~~~~~~~~~~~~~~~~~~}~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~b~~~bddddddddddddddddddd
@HELIUM_000100422_612GNAAXX:7:1:8849:9880#0/2_PairEnd sminR=40.0; pairend_limit=108; tail_quality=64.3; mid_quality=37.8724489796; ali_dir=left; score=25.9064763088; mode=joined; error=No primer match; head_quality=33.0; avg_quality=38.8703703704; sminL=40.0; 
ggacgggagagggggggggggggggaaggggggggttttggggggggggggccgttttaaaaaaaaaaaaaaaacaacgtgacatggcacagccgtcacaactgtcagctgacgaccactggcagtgagtctactctcctattttgttttttttttcaagcagaagacggcatacgatatcggtctcggcattcctgctgaaccgctcttccgatc
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BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB_`X`b[`T[ZWHZTWU]]b]]TZ^__\^`\OOOOO^`^Z^_ba_bbbbbb
@HELIUM_000100422_612GNAAXX:7:1:8649:5297#0/2_CONS ali_length=104; direction=right; seq_ab_match=104; sminR=40.0; seq_b_mismatch=0; seq_a_mismatch=0; tail_quality=93.0; seq_b_deletion=4; mid_quality=93.0; seq_a_deletion=4; seq_b_single=0; score=415.823014771; seq_a_insertion=0; mode=alignment; error=No primer match; head_quality=93.0; avg_quality=93.0; sminL=40.0; seq_a_single=0; score_norm=3.99829821895; seq_b_insertion=0; 
ccagcgagatcccattgagtctctgcacctatcctttttttcgttttctgaatctttgtttggaaaaaaacaggatttggctcaggattgcccgatctcgctgg
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@HELIUM_000100422_612GNAAXX:7:1:8702:15835#0/2_CONS ali_length=85; direction=left; seq_ab_match=85; sminR=40.0; seq_b_mismatch=0; seq_a_mismatch=0; tail_quality=67.0; seq_b_deletion=0; mid_quality=86.8828828829; seq_a_deletion=0; seq_b_single=23; score=339.959438284; seq_a_insertion=0; mode=alignment; error=No primer match; head_quality=67.0; avg_quality=83.8473282443; sminL=40.0; seq_a_single=23; score_norm=3.99952280334; seq_b_insertion=0; 
cccatcgctcagatatccgttgccgagagtcgtgtagattatatagaattgcaactcggggtgcggccagcaagccagccacatcccctcgttaggcacagtgttccttgacgccttcggtgagcgatggg
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ddddddddddddddddddddddd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~{~~~~~~~~ddddddddddddddddddddddd
@HELIUM_000100422_612GNAAXX:7:1:8613:9165#0/2_CONS ali_length=101; direction=left; seq_ab_match=99; sminR=40.0; seq_b_mismatch=0; seq_a_mismatch=2; tail_quality=74.8; seq_b_deletion=0; mid_quality=92.4105263158; seq_a_deletion=0; seq_b_single=7; score=387.825112777; seq_a_insertion=0; mode=alignment; error=No primer match; head_quality=74.8; avg_quality=89.347826087; sminL=40.0; seq_a_single=7; score_norm=3.83985260176; seq_b_insertion=0; 
ccagagcgagtgggcaatcctgagccaaatctttatttttagaaaaacaaaagggcttcagaaagcaaaaataaacataaaggataggtgcagagactcaatggactcgctctgg
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ddddddd~~~~b~~~~~~b~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddddddd
@HELIUM_000100422_612GNAAXX:7:1:8670:8750#0/2_CONS ali_length=90; direction=right; seq_ab_match=90; sminR=40.0; seq_b_mismatch=0; seq_a_mismatch=0; tail_quality=93.0; seq_b_deletion=18; mid_quality=93.0; seq_a_deletion=18; seq_b_single=0; score=359.914979278; seq_a_insertion=0; mode=alignment; error=No primer match; head_quality=93.0; avg_quality=93.0; sminL=40.0; seq_a_single=0; score_norm=3.99905532531; seq_b_insertion=0; 
ccgaggcttactaggattagataccctattatttttgaatgttaatgtttgtttgcttgagtagtattagttatgttcttgaaagcctcg
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@HELIUM_000100422_612GNAAXX:7:1:8732:6209#0/2_PairEnd sminR=40.0; pairend_limit=108; tail_quality=57.9; mid_quality=36.5408163265; ali_dir=right; score=15.9727840143; mode=joined; error=No primer match; head_quality=33.0; avg_quality=37.3657407407; sminL=40.0; 
gctctacagaggcgggggggggggagaaggggaaatcatggggggggggggcgacatctaaaaacatacatacaacccacacctcctaccacacagctcccagcgcaaagatagatcatgatggtaagtagaggcaaatgagatcatctatttttttcaaagagaagacggcatacgatatcggtctcggcattcctgctaaccgctcttccgatc
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BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBa[]aa_aaaa]aa`]a\[aZ`\ZcMWR]Z`````
@HELIUM_000100422_612GNAAXX:7:1:8858:2566#0/2_PairEnd sminR=40.0; pairend_limit=108; tail_quality=65.0; mid_quality=40.6581632653; ali_dir=left; score=15.7312871104; mode=joined; error=No primer match; head_quality=33.0; avg_quality=41.4305555556; sminL=40.0; 
ggctcggagagagggggggggggggggaggggggggatccgggggggggggggtcttacaaaaaaacacaaaacacataaccactctcacacccacactcgcacacccggatgtggttgtggtgtgcgcgtggatggtgtggtgtggtttttttttcaagcagaagacggcatacgagatcggtctcggcattcctgctgaaccgctcttccgatc
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BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBa_a_a]aaaa_`Y`_W]Y[S]]aaaabbbbbcbbbbbbbbbbbbb`bbbbbbbbbbbbbb
@HELIUM_000100422_612GNAAXX:7:1:8644:15229#0/2_CONS ali_length=106; direction=left; seq_ab_match=103; sminR=40.0; seq_b_mismatch=2; seq_a_mismatch=1; tail_quality=83.8; seq_b_deletion=0; mid_quality=90.8; seq_a_deletion=0; seq_b_single=2; score=399.617128202; seq_a_insertion=0; mode=alignment; error=No primer match; head_quality=87.8; avg_quality=89.8909090909; sminL=40.0; seq_a_single=2; score_norm=3.76997290756; seq_b_insertion=0; 
cacacgctctccattgagtctctgcacctatcctttttgattttcgctttctgaatctttgtttgttttcggaaaacgtgatttggctcaggattgcccagagcgtgtgg
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dd~~~~~~~~~~~~~~~~~~~~~~~~{~~~~b~~~~~~~~~{|~~~~s|~v~~|p~~~~~~~~~~~u~qy~a~~~~~~~x~|~~~~z{~|~o|~{yvwwy~~|~~[~~cb
@HELIUM_000100422_612GNAAXX:7:1:8613:5665#0/2_CONS ali_length=90; direction=right; seq_ab_match=89; sminR=40.0; seq_b_mismatch=1; seq_a_mismatch=0; tail_quality=90.2; seq_b_deletion=18; mid_quality=93.0; seq_a_deletion=18; seq_b_single=0; score=351.879189487; seq_a_insertion=0; mode=alignment; error=No primer match; head_quality=93.0; avg_quality=92.6888888889; sminL=40.0; seq_a_single=0; score_norm=3.90976877208; seq_b_insertion=0; 
ccttcctggggtagtactctggcgaataattttgttatattaattacttgtgtttagggctaagcatagtggggtatctaaccaggaagg
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~b~~~~~~~
@HELIUM_000100422_612GNAAXX:7:1:8823:6682#0/2_PairEnd sminR=40.0; pairend_limit=108; tail_quality=64.9; mid_quality=41.693877551; ali_dir=right; score=15.9839512414; mode=joined; error=No primer match; head_quality=33.0; avg_quality=42.3657407407; sminL=40.0; 
gatcgggagagcgtcgtgtaggggaagagggtagatctcggggggggccgtatcattaaaaaaaaaaacaaacatcagcacgaagcacatgacaccgcctagctatcaatcttgagatgagatcagacatctgtttgttttcttttgtttttttttcaagcagaagacggcatacgatatcggtctcggcattcctgctgaaccgctcttccgatc
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BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB_aa]a`]^S``aabaab^bbbbab_c``abbbbbbbcbbbbbbbbbbbbbbbbbbbbbbbbbbab