Mercurial > repos > iuc > odgi_build
view build.xml @ 0:0acf4893bee5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/odgi/ commit 6de23fe4201ec9c2b209f00ae0e19962c232828c"
author | iuc |
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date | Wed, 08 Apr 2020 12:12:18 -0400 |
parents | |
children | 7fb3bb1e221e |
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<tool id="odgi_build" name="odgi build" version="@TOOL_VERSION@"> <description>construct a dynamic succinct variation graph</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ odgi build -g '$gfa' -o '$odgi_output' $sort #if $to_gfa: --to-gfa > '$gfa_output' #end if ]]></command> <inputs> <param argument="--gfa" type="data" format="gfa1" label="Construct the graph from this GFA input file" /> <param argument="--sort" type="boolean" truevalue="--sort" falsevalue="" checked="false" label="Topological sort the graph" help="Apply generalized topological sort to the graph and set node ids to order." /> <param argument="--to-gfa" type="boolean" truevalue="--to-gfa" falsevalue="" checked="false" label="Output additional GFA file" help="" /> </inputs> <outputs> <data name="odgi_output" format="odgi" /> <data name="gfa_output" format="gfa1"> <filter>to_gfa</filter> </data> </outputs> <tests> <test> <param name="gfa" value="t.gfa" /> <param name="sort" value="true" /> <param name="to_gfa" value="true" /> <output name="odgi_output" file="note5_out.og" /> <output name="gfa_output" file="note5.gfa" /> </test> </tests> <help><![CDATA[ optimized dynamic genome/graph implementation (odgi) ---------------------------------------------------- Construct a dynamic succinct variation graph (build) ]]></help> <expand macro="citations"> </expand> </tool>