Mercurial > repos > iuc > odgi_viz
view vis.xml @ 0:eeea2b5a81dd draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/odgi/ commit 6de23fe4201ec9c2b209f00ae0e19962c232828c"
author | iuc |
---|---|
date | Wed, 08 Apr 2020 12:12:55 -0400 |
parents | |
children | 536768de4748 |
line wrap: on
line source
<tool id="odgi_viz" name="odgi viz" version="@TOOL_VERSION@"> <description>variation graph visualizations</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ odgi viz -i '$input' --out='$output' -x $width -y $height #if str($path_height) --path-height=$path_height #end if #if str($path_x_padding) --path-x-padding=$path_x_padding #end if $path_per_row #if str($link_path_pieces): --link-path-pieces=$link_path_pieces #end if --threads=\${GALAXY_SLOTS:-1} ]]></command> <inputs> <param name="input" type="data" format="odgi" label="odgi input file" /> <param argument="--width" type="integer" min="0" value="4000" label="Width in pixels of output image" /> <param argument="--height" type="integer" min="0" value="500" label="Height in pixels of output image" /> <param argument="--path-height" type="integer" min="0" optional="true" label="Path display height" /> <param argument="--path-x-padding" type="integer" min="0" optional="true" label="Path x padding" /> <param argument="--path-per-row" type="boolean" truevalue="--path-per-row" falsevalue="" label="Display a single path per row rather than packing them" /> <param argument="--link-path-pieces" type="float" optional="true" label="Show thin links of this relative width to connect path pieces" /> </inputs> <outputs> <data name="output" format="png" /> </outputs> <tests> <test> <param name="input" value="note5_out.og" /> <param name="width" value="4000" /> <param name="height" value="500" /> <output name="output" file="note5.png" ftype="png" /> </test> </tests> <help><![CDATA[ optimized dynamic genome/graph implementation (odgi) ---------------------------------------------------- variation graph visualizations (viz) ]]></help> <expand macro="citations" /> </tool>