# HG changeset patch
# User iuc
# Date 1710232436 0
# Node ID 9607b69326e1116fd67c139620f811b0106ccbe2
# Parent  2eebe7f521f3f8b380f7ec48dcb6fdcc68c86914
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/omark/ commit 344924b5d73a8cb6f70069694072b69f92f71dda

diff -r 2eebe7f521f3 -r 9607b69326e1 macros.xml
--- a/macros.xml	Thu Mar 07 18:22:16 2024 +0000
+++ b/macros.xml	Tue Mar 12 08:33:56 2024 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">0.3.0</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
 
     <xml name="requirements">
         <requirement type="package" version="@TOOL_VERSION@">omark</requirement>
diff -r 2eebe7f521f3 -r 9607b69326e1 omark.xml
--- a/omark.xml	Thu Mar 07 18:22:16 2024 +0000
+++ b/omark.xml	Tue Mar 12 08:33:56 2024 +0000
@@ -17,11 +17,20 @@
     -f 'output_omamer'
     -d '$database.fields.path'
     $omark_mode
-    -i '$input_iso'
-    -t '$t'
-    -r '$r'
+
+    #if $input_iso:
+        -i '$input_iso'
+    #end if
+
+    #if $t:
+        -t '$t'
+    #end if
+
+    #if $r:
+        -r '$r'
+    #end if
+
     -o omark_galaxy
-
     ]]></command>
 
     <inputs>
@@ -49,7 +58,7 @@
             <validator type="regex">[0-9a-zA-Z_]+</validator>
         </param>
 
-        <param name="outputs" type="select" optional="true" multiple="true" label="Which outputs should be generated">
+        <param name="outputs" type="select" multiple="true" label="Which outputs should be generated">
             <option value="detail_sum" selected="true">Detailed summary</option>
             <option value="hog">HOG identifiers</option>
             <option value="pdf">PDF Graphic representation </option>