Mercurial > repos > iuc > ont_fast5_api_multi_to_single_fast5
diff multi_to_single_fast5.xml @ 0:1a37f742e7d7 draft
"planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit a5d038871ff0e1b133039b59183dee795449b383"
author | iuc |
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date | Fri, 12 Jun 2020 15:07:40 -0400 |
parents | |
children | 68fc6a9c05df |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/multi_to_single_fast5.xml Fri Jun 12 15:07:40 2020 -0400 @@ -0,0 +1,65 @@ +<?xml version="1.0"?> +<tool id="ont_fast5_api_multi_to_single_fast5" name="@TOOL_NAME@ Multi to single" version="@TOOL_VERSION@+galaxy0" profile="18.01"> + <description>read file(s)</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <version_command><![CDATA[multi_to_single_fast5 -v]]></version_command> + <command detect_errors="exit_code"><![CDATA[ +## initialize +@INITIALIZE@ + +## run +multi_to_single_fast5 +## required +@INPUTPATH@ +@SAVEPATH@ +## optional +@THREADS@ + +## create tarball +@TARBALL@ + ]]></command> + <inputs> + <expand macro="input"/> + </inputs> + <outputs> + <expand macro="output"/> + </outputs> + <tests> + <!-- #1 default --> + <test expect_num_outputs="1"> + <param name="input_path" value="multi.fast5.tar"/> + <output name="out_results"> + <assert_contents> + <has_size value="71680"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[ +.. class:: infomark + +**What it does** + +@WID@ + +*multi_to_single_fast5* converts multi read FAST5 file(s) into single read FAST5 files. + +**Input** + +Multi read file(s) in FAST5 format that are stored in a flat TAR. + +**Output** + +Single read FAST5 files that are stored in a flat TAR. + +.. class:: infomark + +**References** + +@REFERENCES@ + ]]></help> + <expand macro="citations"/> +</tool> \ No newline at end of file