Mercurial > repos > iuc > ont_fast5_api_single_to_multi_fast5
view single_to_multi_fast5.xml @ 1:ea77d69db382 draft
"planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 2df36b6d30fd69ea532a4fd42daf4741363074f3"
author | iuc |
---|---|
date | Sun, 28 Jun 2020 14:51:05 -0400 |
parents | ceec541f4955 |
children | 435344af6dc9 |
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<?xml version="1.0"?> <tool id="ont_fast5_api_single_to_multi_fast5" name="@TOOL_NAME@ Single to multi" version="@TOOL_VERSION@+galaxy0" profile="18.01"> <description>read file(s)</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <version_command><![CDATA[single_to_multi -v]]></version_command> <command detect_errors="exit_code"><![CDATA[ ## initialize @INITIALIZE@ ## run single_to_multi_fast5 --recursive ## required @INPUTPATH@ @SAVEPATH@ ## optional @COMPRESSION@ @BATCHSIZE@ @THREADS@ ## create tarball @TARBALL@ ]]></command> <inputs> <expand macro="input" label="single"/> <expand macro="batch_size"/> <expand macro="compression"> <option value="none" selected="true">None</option> <option value="vbz">VBZ</option> </expand> </inputs> <outputs> <expand macro="output"/> </outputs> <tests> <!-- #1 default --> <test expect_num_outputs="1"> <param name="input_path" value="single.fast5.tar"/> <output name="out_results"> <assert_contents> <has_size value="40960"/> </assert_contents> </output> </test> <!-- #2 --> <test expect_num_outputs="1"> <param name="input_path" value="single.fast5.tar"/> <param name="batch_size" value="3"/> <param name="compression" value="vbz"/> <output name="out_results"> <assert_contents> <has_size value="51200"/> </assert_contents> </output> </test> <!-- #3 --> <test expect_num_outputs="1"> <param name="input_path" value="single.fast5.tar"/> <param name="compression" value="vbz_legacy_v0"/> <output name="out_results"> <assert_contents> <has_size value="40960"/> </assert_contents> </output> </test> <!-- #4 --> <test expect_num_outputs="1"> <param name="input_path" value="single.fast5.tar"/> <param name="compression" value="gzip"/> <output name="out_results"> <assert_contents> <has_size value="40960"/> </assert_contents> </output> </test> </tests> <help><![CDATA[ .. class:: infomark **What it does** @WID@ *single_to_multi_fast5* converts single read FAST5 files into multi read FAST5 file(s). **Input** Single read files in FAST5 format that are stored in a flat TAR. **Output** Multi read file(s) in FAST5 format that are stored in a flat TAR. .. class:: infomark **References** @REFERENCES@ ]]></help> <expand macro="citations"/> </tool>