Mercurial > repos > iuc > onto_tk_get_subontology_from
annotate test-data/lowest_common_ancestor.tab @ 0:1b3796bc5ac0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:35:10 -0500 |
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1b3796bc5ac0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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1 |
1b3796bc5ac0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
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2 description: Get the lowest common ancestor (LCA) of two terms in a given OBO ontology. |
1b3796bc5ac0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
parents:
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changeset
|
3 usage : get_lowest_common_ancestor.pl [options] |
1b3796bc5ac0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
parents:
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changeset
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4 options : |
1b3796bc5ac0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
parents:
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changeset
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5 -f OBO input file |
1b3796bc5ac0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
parents:
diff
changeset
|
6 -a term 1 ID |
1b3796bc5ac0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
parents:
diff
changeset
|
7 -b term 2 ID |
1b3796bc5ac0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
parents:
diff
changeset
|
8 example: |
1b3796bc5ac0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
iuc
parents:
diff
changeset
|
9 perl get_lowest_common_ancestor.pl -f go.obo -t GO:0000234 -t GO:0000111 |