view get_subontology_from.xml @ 0:1b3796bc5ac0 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6

<tool id="onto_tk_get_subontology_from" name="Get subontology" version="@VERSION@.0">
   <description>from a given OBO term</description>
    <macros>
        <import>onto_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="aggressive">
    get_subontology_from.pl
        -f '$input'
        -t '$term_id' > '$output'
    </command>
    <inputs>
        <expand macro="input_ontology" />
        <expand macro="term_id" />
    </inputs>
    <outputs>
        <data format="obo" name="output" label="Subontology of ${on_string} with $term_id"/>
    </outputs>
    <tests>
        <test>
            <param name="input" value="pre_cco_core.obo"/>
            <param name="term_id" value="CCO:P0000003"/>
            <output name="output" file="sub_ontology.obo" lines_diff="2"/>
        </test>
    </tests>
    <help>

Extracts a subontology (in OBO format) of a given ontology having as root node the provided term ID.

    </help>
    <expand macro="citations" />
</tool>