Mercurial > repos > iuc > onto_tk_term_id_vs_term_def
annotate README.md @ 1:83dc1b4ee323 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 8564cf195c7700975710c13f900a787e2801bb9d
author | iuc |
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date | Fri, 16 Feb 2018 05:57:43 -0500 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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1 # README |
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3 ONTO-Toolkit is a collection of Galaxy tools for managing ontologies |
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4 that are represented in the OBO flat file format (spec 1.2 and 1.4). |
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5 |
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6 Those tools are basically wrappers around the most commonly used tools |
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7 provided by the ONTO-PERL suite. |
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8 |
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9 See also: |
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11 1. ONTO-PERL: An API supporting the development and analysis of bio-ontologies |
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12 Antezana E, Egana M, De Baets B, Kuiper M, Mironov V. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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13 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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14 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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15 2. ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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16 Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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17 BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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18 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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19 3. OPPL-Galaxy: Enhancing ontology exploitation in Galaxy with OPPL. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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20 Egana M, Fernandez-Breis JT, Antezana E. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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21 Semantic Web Applications and Tools for Life Sciences (SWAT4LS), London, UK (2011) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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22 |
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23 |
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24 ## CITING ONTO-Toolkit |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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25 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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26 If you use ONTO-Toolkit in your work, you are kindly requested to cite: |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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27 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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28 ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies |
4d1fb16ff86a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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29 Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M. |
4d1fb16ff86a
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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30 BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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31 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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32 |
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33 ## COPYRIGHT AND LICENCE |
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34 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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35 Copyright (c) 2010-2014 Erick Antezana and Bjoern Gruening. |
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36 OONTO-Toolkit is free software; you can redistribute it and/or |
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37 modify it under the terms GPL3+, see the additional LICENSE file. |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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38 |
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39 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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41 ## INSTALLATION |
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42 |
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43 It is recommended to install this wrapper via the `Galaxy Tool Shed`. |
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44 |
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45 .. _`Galaxy Tool Shed`: http://toolshed.g2.bx.psu.edu/view/bgruening/onto_perl_toolkit |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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46 |
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48 ## History |
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49 |
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50 - v1.41.0: Initial release, forked from https://toolshed.g2.bx.psu.edu/view/erick-antezana/onto-toolkit |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
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51 with kind permission from Erick Antezana, who is the main developer of the underlying PERL library. |
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53 |