Mercurial > repos > iuc > onto_tk_term_id_vs_term_name
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
| author | iuc |
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| date | Fri, 10 Nov 2017 11:32:46 -0500 |
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| 1 # README | |
| 2 | |
| 3 ONTO-Toolkit is a collection of Galaxy tools for managing ontologies | |
| 4 that are represented in the OBO flat file format (spec 1.2 and 1.4). | |
| 5 | |
| 6 Those tools are basically wrappers around the most commonly used tools | |
| 7 provided by the ONTO-PERL suite. | |
| 8 | |
| 9 See also: | |
| 10 | |
| 11 1. ONTO-PERL: An API supporting the development and analysis of bio-ontologies | |
| 12 Antezana E, Egana M, De Baets B, Kuiper M, Mironov V. | |
| 13 Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042 | |
| 14 | |
| 15 2. ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies | |
| 16 Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M. | |
| 17 BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8 | |
| 18 | |
| 19 3. OPPL-Galaxy: Enhancing ontology exploitation in Galaxy with OPPL. | |
| 20 Egana M, Fernandez-Breis JT, Antezana E. | |
| 21 Semantic Web Applications and Tools for Life Sciences (SWAT4LS), London, UK (2011) | |
| 22 | |
| 23 | |
| 24 ## CITING ONTO-Toolkit | |
| 25 | |
| 26 If you use ONTO-Toolkit in your work, you are kindly requested to cite: | |
| 27 | |
| 28 ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies | |
| 29 Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M. | |
| 30 BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8 | |
| 31 | |
| 32 | |
| 33 ## COPYRIGHT AND LICENCE | |
| 34 | |
| 35 Copyright (c) 2010-2014 Erick Antezana and Bjoern Gruening. | |
| 36 OONTO-Toolkit is free software; you can redistribute it and/or | |
| 37 modify it under the terms GPL3+, see the additional LICENSE file. | |
| 38 | |
| 39 | |
| 40 | |
| 41 ## INSTALLATION | |
| 42 | |
| 43 It is recommended to install this wrapper via the `Galaxy Tool Shed`. | |
| 44 | |
| 45 .. _`Galaxy Tool Shed`: http://toolshed.g2.bx.psu.edu/view/bgruening/onto_perl_toolkit | |
| 46 | |
| 47 | |
| 48 ## History | |
| 49 | |
| 50 - v1.41.0: Initial release, forked from https://toolshed.g2.bx.psu.edu/view/erick-antezana/onto-toolkit | |
| 51 with kind permission from Erick Antezana, who is the main developer of the underlying PERL library. | |
| 52 | |
| 53 |