Mercurial > repos > iuc > onto_tk_term_id_vs_term_name
comparison get_term_id_vs_term_name.xml @ 0:b2471db454a0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
---|---|
date | Fri, 10 Nov 2017 11:32:46 -0500 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:b2471db454a0 |
---|---|
1 <tool id="onto_tk_term_id_vs_term_name" name="Get all the term IDs and term names" version="@VERSION@.0"> | |
2 <description>of a given OBO ontology</description> | |
3 <macros> | |
4 <import>onto_macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements" /> | |
7 <command detect_errors="aggressive"> | |
8 get_term_id_vs_term_name.pl | |
9 -f '$input' > '$output' | |
10 </command> | |
11 <inputs> | |
12 <expand macro="input_ontology" /> | |
13 </inputs> | |
14 <outputs> | |
15 <data format="tabular" name="output"> | |
16 <actions> | |
17 <action name="column_names" type="metadata" default="term ID,term name" /> | |
18 </actions> | |
19 </data> | |
20 </outputs> | |
21 <tests> | |
22 <test> | |
23 <param name="input" value="pre_cco_core.obo"/> | |
24 <output name="output" file="term_id_vs_term_name.tab"/> | |
25 </test> | |
26 </tests> | |
27 <help> | |
28 | |
29 .. class:: infomark | |
30 | |
31 Generates a flat file with two columns (TAB separated) with the term_id and term_name from the elements of the given OBO ontology. | |
32 | |
33 | |
34 **Example** | |
35 | |
36 If you ask for the term IDs and terms names of the Gene Ontology, you will get:: | |
37 | |
38 GO:0050129 N-formylglutamate deformylase activity | |
39 GO:0051663 oocyte nucleus localization involved in oocyte dorsal/ventral axis specification | |
40 GO:0051712 positive regulation of killing of cells of another organism | |
41 GO:0033972 proclavaminate amidinohydrolase activity | |
42 GO:0032513 negative regulation of protein phosphatase type 2B activity | |
43 GO:0008711 ADP-L-glycero-D-manno-heptose synthase activity | |
44 GO:0006285 base-excision repair, AP site formation | |
45 GO:0043527 tRNA methyltransferase complex | |
46 ... | |
47 ... | |
48 | |
49 </help> | |
50 <expand macro="citations" /> | |
51 </tool> |