diff test-data/terms.tab @ 0:b2471db454a0 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/terms.tab	Fri Nov 10 11:32:46 2017 -0500
@@ -0,0 +1,391 @@
+CCO:B0000000	core cell cycle protein
+CCO:P0000001	mitotic spindle elongation
+CCO:P0000002	mitotic sister chromatid segregation
+CCO:P0000003	M phase specific microtubule process
+CCO:P0000004	regulation of progression through cell cycle
+CCO:P0000005	cell cycle checkpoint
+CCO:P0000006	DNA replication checkpoint
+CCO:P0000007	DNA damage checkpoint
+CCO:P0000008	cell morphogenesis checkpoint
+CCO:P0000009	regulation of cyclin-dependent protein kinase activity
+CCO:P0000010	G1 phase of mitotic cell cycle
+CCO:P0000011	G1/S transition of mitotic cell cycle
+CCO:P0000012	G1/S-specific transcription in mitotic cell cycle
+CCO:P0000013	S phase of mitotic cell cycle
+CCO:P0000014	G2 phase of mitotic cell cycle
+CCO:P0000015	G2/M transition of mitotic cell cycle
+CCO:P0000016	M phase of mitotic cell cycle
+CCO:P0000017	mitotic prophase
+CCO:P0000018	mitotic metaphase
+CCO:P0000019	mitotic anaphase
+CCO:P0000020	mitotic anaphase A
+CCO:P0000021	mitotic anaphase B
+CCO:P0000022	mitotic telophase
+CCO:P0000023	G1-specific transcription in mitotic cell cycle
+CCO:P0000024	S-phase-specific transcription in mitotic cell cycle
+CCO:P0000025	G2-specific transcription in mitotic cell cycle
+CCO:P0000026	G2/M-specific transcription in mitotic cell cycle
+CCO:P0000027	establishment of mitotic spindle orientation
+CCO:P0000028	septin checkpoint
+CCO:P0000029	meiotic spindle organization and biogenesis
+CCO:P0000030	M/G1 transition of mitotic cell cycle
+CCO:P0000031	mitotic prometaphase
+CCO:P0000032	leptotene
+CCO:P0000033	zygotene
+CCO:P0000034	pachytene
+CCO:P0000035	diplotene
+CCO:P0000036	diakinesis
+CCO:P0000037	mitotic cell cycle
+CCO:P0000038	M phase
+CCO:P0000039	cytokinesis after mitosis
+CCO:P0000040	re-entry into mitotic cell cycle
+CCO:P0000041	re-entry into mitotic cell cycle after pheromone arrest
+CCO:P0000042	achiasmate meiosis I
+CCO:P0000043	meiotic DNA double-strand break processing
+CCO:P0000044	meiotic DNA recombinase assembly
+CCO:P0000045	meiotic strand invasion
+CCO:P0000046	meiotic joint molecule formation
+CCO:P0000047	meiotic mismatch repair
+CCO:P0000048	meiotic DNA repair synthesis
+CCO:P0000049	resolution of meiotic joint molecules as recombinants
+CCO:P0000050	meiotic heteroduplex formation
+CCO:P0000051	meiotic strand displacement
+CCO:P0000052	cell cycle arrest in response to pheromone
+CCO:P0000053	negative regulation of exit from mitosis
+CCO:P0000054	meiotic gene conversion
+CCO:P0000055	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
+CCO:P0000056	cell cycle
+CCO:P0000057	cell cycle arrest
+CCO:P0000058	mitotic spindle organization and biogenesis
+CCO:P0000059	male meiotic spindle assembly (sensu Metazoa)
+CCO:P0000060	male meiosis I spindle assembly (sensu Metazoa)
+CCO:P0000061	male meiosis II spindle assembly (sensu Metazoa)
+CCO:P0000062	female meiotic spindle assembly (sensu Metazoa)
+CCO:P0000063	female meiosis I spindle assembly (sensu Metazoa)
+CCO:P0000064	female meiosis II spindle assembly (sensu Metazoa)
+CCO:P0000065	male meiosis chromosome segregation
+CCO:P0000066	mitotic sister chromatid cohesion
+CCO:P0000067	male meiosis sister chromatid cohesion
+CCO:P0000068	female meiosis sister chromatid cohesion
+CCO:P0000069	mitosis
+CCO:P0000070	negative regulation of transcription, mitotic
+CCO:P0000071	negative regulation of transcription from RNA polymerase I promoter, mitotic
+CCO:P0000072	negative regulation of transcription from RNA polymerase II promoter, mitotic
+CCO:P0000073	negative regulation of transcription from RNA polymerase III promoter, mitotic
+CCO:P0000074	activation of transcription on exit from mitosis
+CCO:P0000075	activation of transcription on exit from mitosis, from RNA polymerase I promoter
+CCO:P0000076	activation of transcription on exit from mitosis, from RNA polymerase II promoter
+CCO:P0000077	activation of transcription on exit from mitosis, from RNA polymerase III promoter
+CCO:P0000078	mitotic chromosome condensation
+CCO:P0000079	mitotic nuclear envelope disassembly
+CCO:P0000080	lamin depolymerization
+CCO:P0000081	mitotic chromosome movement towards spindle pole
+CCO:P0000082	mitotic metaphase plate congression
+CCO:P0000083	mitotic chromosome decondensation
+CCO:P0000084	mitotic nuclear envelope reassembly
+CCO:P0000085	vesicle fusion with nuclear membrane
+CCO:P0000086	mitotic nuclear pore complex reassembly
+CCO:P0000087	regulation of mitosis
+CCO:P0000088	traversing start control point of mitotic cell cycle
+CCO:P0000089	regulation of S phase of mitotic cell cycle
+CCO:P0000090	mitotic metaphase/anaphase transition
+CCO:P0000091	anaphase-promoting complex activation during mitotic cell cycle
+CCO:P0000092	mitotic checkpoint
+CCO:P0000093	mitotic spindle checkpoint
+CCO:P0000094	mitotic G2 checkpoint
+CCO:P0000095	regulation of exit from mitosis
+CCO:P0000096	centrosome cycle
+CCO:P0000097	centriole replication
+CCO:P0000098	mitotic centrosome separation
+CCO:P0000099	male meiosis centrosome cycle
+CCO:P0000100	cytokinesis after meiosis I
+CCO:P0000101	cytokinesis after meiosis II
+CCO:P0000102	endomitotic cell cycle
+CCO:P0000103	meiosis
+CCO:P0000104	meiosis I
+CCO:P0000105	meiotic prophase I
+CCO:P0000106	synapsis
+CCO:P0000107	synaptonemal complex assembly
+CCO:P0000108	meiotic recombination
+CCO:P0000109	meiotic metaphase I
+CCO:P0000110	meiotic anaphase I
+CCO:P0000111	meiotic telophase I
+CCO:P0000112	meiosis II
+CCO:P0000113	meiotic prophase II
+CCO:P0000114	meiotic metaphase II
+CCO:P0000115	meiotic anaphase II
+CCO:P0000116	meiotic telophase II
+CCO:P0000117	male meiosis
+CCO:P0000118	male meiosis I
+CCO:P0000119	male meiosis II
+CCO:P0000120	female meiosis
+CCO:P0000121	female meiosis I
+CCO:P0000122	meiotic recombination nodule assembly
+CCO:P0000123	female meiosis II
+CCO:P0000124	regulation of progression through mitotic cell cycle
+CCO:P0000125	regulation of progression through preblastoderm mitotic cell cycle
+CCO:P0000126	regulation of progression through syncytial blastoderm mitotic cell cycle
+CCO:P0000127	cyclin catabolic process
+CCO:P0000128	meiotic G2/MI transition
+CCO:P0000129	regulation of progression through embryonic mitotic cell cycle
+CCO:P0000130	cell plate formation (sensu Magnoliophyta)
+CCO:P0000131	male meiotic spindle assembly (sensu Viridiplantae)
+CCO:P0000132	female meiosis chromosome segregation
+CCO:P0000133	second mitotic wave (sensu Endopterygota)
+CCO:P0000134	meiotic chromosome movement towards spindle pole
+CCO:P0000135	female meiotic chromosome movement towards spindle pole
+CCO:P0000136	male meiotic chromosome movement towards spindle pole
+CCO:P0000137	modification by virus of host cell cycle regulation
+CCO:P0000138	actin filament reorganization during cell cycle
+CCO:P0000139	regulation of mitotic metaphase/anaphase transition
+CCO:P0000140	mitotic spindle organization and biogenesis in nucleus
+CCO:P0000141	horsetail nuclear movement
+CCO:P0000142	cell cycle arrest in response to nitrogen starvation
+CCO:P0000143	regulation of centriole-centriole cohesion
+CCO:P0000144	linear element formation
+CCO:P0000145	septation initiation signaling
+CCO:P0000146	regulation of septation initiation signaling
+CCO:P0000147	negative regulation of septation initiation signaling
+CCO:P0000148	positive regulation of septation initiation signaling
+CCO:P0000149	sister chromatid biorientation
+CCO:P0000150	collapsed replication fork processing
+CCO:P0000151	positive regulation of exit from mitosis
+CCO:P0000152	cytokinesis checkpoint
+CCO:P0000153	cytokinesis, contractile ring maintenance
+CCO:P0000154	cell size control checkpoint
+CCO:P0000155	G1/S transition size control checkpoint
+CCO:P0000156	G2/M transition size control checkpoint
+CCO:P0000157	DNA integrity checkpoint
+CCO:P0000158	G1 DNA damage checkpoint
+CCO:P0000159	G2/M transition DNA damage checkpoint
+CCO:P0000160	intra-S DNA damage checkpoint
+CCO:P0000161	S-M checkpoint
+CCO:P0000162	G1/S transition checkpoint
+CCO:P0000163	G2/M transition checkpoint
+CCO:P0000164	spindle checkpoint
+CCO:P0000165	spindle orientation checkpoint
+CCO:P0000166	homologous chromosome orientation during meiosis
+CCO:P0000167	G1/S-specific regulation of cyclin-dependent protein kinase activity
+CCO:P0000168	G1/S-specific negative regulation of cyclin-dependent protein kinase activity
+CCO:P0000169	G1/S-specific positive regulation of cyclin-dependent protein kinase activity
+CCO:P0000170	G2/M-specific regulation of cyclin-dependent protein kinase activity
+CCO:P0000171	G2/M-specific negative regulation of cyclin-dependent protein kinase activity
+CCO:P0000172	G2/M-specific positive regulation of cyclin-dependent protein kinase activity
+CCO:P0000173	regulation of contractile ring contraction during cytokinesis
+CCO:P0000174	attachment of telomeres to spindle pole body
+CCO:P0000175	preblastoderm mitotic cell cycle
+CCO:P0000176	syncytial blastoderm mitotic cell cycle
+CCO:P0000177	establishment of mitotic spindle localization
+CCO:P0000178	regulation of meiosis
+CCO:P0000179	polar body extrusion after meiotic divisions
+CCO:P0000180	meiotic DNA double-strand break formation
+CCO:P0000181	early meiotic recombination nodule assembly
+CCO:P0000182	late meiotic recombination nodule assembly
+CCO:P0000183	meiotic metaphase I plate congression
+CCO:P0000184	meiotic metaphase II plate congression
+CCO:P0000185	meiotic spindle stabilization
+CCO:P0000186	mitotic spindle stabilization
+CCO:P0000187	G0 to G1 transition
+CCO:P0000188	negative regulation of meiotic recombination
+CCO:P0000189	meiotic chromosome segregation
+CCO:P0000190	telomere clustering
+CCO:P0000191	homologous chromosome segregation
+CCO:P0000192	meiotic sister chromatid segregation
+CCO:P0000193	mitotic cell cycle, embryonic
+CCO:P0000194	negative regulation of cyclin-dependent protein kinase activity
+CCO:P0000195	positive regulation of cyclin-dependent protein kinase activity
+CCO:P0000196	negative regulation of S phase of mitotic cell cycle
+CCO:P0000197	positive regulation of S phase of mitotic cell cycle
+CCO:P0000198	negative regulation of progression through cell cycle
+CCO:P0000199	positive regulation of progression through cell cycle
+CCO:P0000200	negative regulation of meiosis
+CCO:P0000201	positive regulation of meiosis
+CCO:P0000202	negative regulation of mitosis
+CCO:P0000203	positive regulation of mitosis
+CCO:P0000204	negative regulation of mitotic metaphase/anaphase transition
+CCO:P0000205	positive regulation of mitotic metaphase/anaphase transition
+CCO:P0000206	regulation of transcription, mitotic
+CCO:P0000207	positive regulation of transcription, mitotic
+CCO:P0000208	negative regulation of progression through mitotic cell cycle
+CCO:P0000209	positive regulation of progression through mitotic cell cycle
+CCO:P0000210	negative regulation of progression through embryonic mitotic cell cycle
+CCO:P0000211	positive regulation of mitotic cell cycle, embryonic
+CCO:P0000212	negative regulation of progression through preblastoderm mitotic cell cycle
+CCO:P0000213	positive regulation of progression through preblastoderm mitotic cell cycle
+CCO:P0000214	negative regulation of progression through syncytial blastoderm mitotic cell cycle
+CCO:P0000215	positive regulation of progression through syncytial blastoderm mitotic cell cycle
+CCO:P0000216	regulation of transcription from RNA polymerase I promoter, mitotic
+CCO:P0000217	positive regulation of transcription from RNA polymerase I promoter, mitotic
+CCO:P0000218	regulation of transcription from RNA polymerase II promoter, mitotic
+CCO:P0000219	positive regulation of transcription from RNA polymerase II promoter, mitotic
+CCO:P0000220	regulation of transcription from RNA polymerase III promoter, mitotic
+CCO:P0000221	positive regulation of transcription from RNA polymerase III promoter, mitotic
+CCO:P0000222	regulation of centriole replication
+CCO:P0000223	negative regulation of centriole replication
+CCO:P0000224	positive regulation of centriole replication
+CCO:P0000225	regulation of mitotic centrosome separation
+CCO:P0000226	negative regulation of mitotic centrosome separation
+CCO:P0000227	positive regulation of mitotic centrosome separation
+CCO:P0000228	regulation of centrosome cycle
+CCO:P0000229	negative regulation of centrosome cycle
+CCO:P0000230	positive regulation of centrosome cycle
+CCO:P0000231	suppression by virus of host cell cycle arrest
+CCO:P0000232	replication fork protection
+CCO:P0000233	chiasma formation
+CCO:P0000234	regulation of transcription, meiotic
+CCO:P0000235	negative regulation of transcription, meiotic
+CCO:P0000236	positive regulation of transcription, meiotic
+CCO:P0000237	meiotic nuclear envelope disassembly
+CCO:P0000238	meiosis I nuclear envelope disassembly
+CCO:P0000239	meiosis II nuclear envelope disassembly
+CCO:P0000240	meiotic sister chromatid cohesion
+CCO:P0000241	meiotic chromosome decondensation
+CCO:P0000242	meiotic spindle assembly
+CCO:P0000243	mitotic spindle assembly
+CCO:P0000244	mitotic spindle disassembly
+CCO:P0000245	meiotic spindle disassembly
+CCO:P0000246	meiotic spindle elongation
+CCO:P0000247	mitotic spindle midzone assembly
+CCO:P0000248	meiotic spindle midzone assembly
+CCO:P0000249	establishment of meiotic spindle localization
+CCO:P0000250	establishment of meiotic spindle orientation
+CCO:P0000251	centrosome duplication
+CCO:P0000252	centrosome separation
+CCO:P0000253	mitotic sister chromatid separation
+CCO:P0000254	meiotic chromosome separation
+CCO:P0000255	male meiosis chromosome separation
+CCO:P0000256	female meiosis chromosome separation
+CCO:P0000257	meiotic metaphase plate congression
+CCO:P0000258	attachment of spindle microtubules to mitotic chromosome
+CCO:P0000259	attachment of spindle microtubules to kinetochore during mitosis
+CCO:P0000260	attachment of spindle microtubules to kinetochore during meiotic chromosome segregation
+CCO:P0000261	attachment of spindle microtubules to meiotic chromosome
+CCO:P0000262	G1 phase
+CCO:P0000263	G2 phase
+CCO:P0000264	S phase
+CCO:P0000265	meiotic cell cycle
+CCO:P0000266	anaphase
+CCO:P0000267	metaphase
+CCO:P0000268	prophase
+CCO:P0000269	interphase
+CCO:P0000270	telophase
+CCO:P0000271	M phase of meiotic cell cycle
+CCO:P0000272	interphase of meiotic cell cycle
+CCO:P0000273	interphase of mitotic cell cycle
+CCO:P0000274	G1 phase of meiotic cell cycle
+CCO:P0000275	G2 phase of meiotic cell cycle
+CCO:P0000276	S phase of meiotic cell cycle
+CCO:P0000277	meiotic nuclear envelope reassembly
+CCO:P0000278	meiosis I nuclear envelope reassembly
+CCO:P0000279	meiosis II nuclear envelope reassembly
+CCO:P0000280	interphase microtubule nucleation by interphase microtubule organizing center
+CCO:P0000281	negative regulation of ubiquitin ligase activity during mitotic cell cycle
+CCO:P0000282	positive regulation of ubiquitin ligase activity during mitotic cell cycle
+CCO:P0000283	regulation of ubiquitin ligase activity during mitotic cell cycle
+CCO:P0000284	regulation of ubiquitin ligase activity during meiotic cell cycle
+CCO:P0000285	positive regulation of ubiquitin ligase activity during meiotic cell cycle
+CCO:P0000286	negative regulation of ubiquitin ligase activity during meiotic cell cycle
+CCO:P0000287	regulation of progression through meiotic cell cycle
+CCO:P0000288	positive regulation of progression through meiotic cell cycle
+CCO:P0000289	negative regulation of progression through meiotic cell cycle
+CCO:P0000290	attachment of spindle microtubules to kinetochore during meiosis I
+CCO:P0000291	attachment of spindle microtubules to kinetochore during meiosis II
+CCO:P0000292	anaphase-promoting complex activation during meiotic cell cycle
+CCO:P0000293	meiotic recombination checkpoint
+CCO:P0000294	regulation of cell cycle
+CCO:P0000295	cell cycle switching, meiotic to mitotic cell cycle
+CCO:P0000296	cell cycle switching, mitotic to meiotic cell cycle
+CCO:P0000297	germline cell cycle switching, mitotic to meiotic cell cycle
+CCO:P0000298	meiotic sister chromatid cohesion, centromeric
+CCO:P0000299	meiotic sister chromatid arm separation
+CCO:P0000300	meiotic sister chromatid centromere separation
+CCO:P0000301	meiotic sister chromatid separation
+CCO:P0000302	homologous chromosome movement towards spindle pole during meiosis I
+CCO:P0000303	sister chromosome movement towards spindle pole during meiosis II
+CCO:P0000304	meiotic sister chromatid cohesion, arms
+CCO:P0000305	lateral element assembly
+CCO:P0000306	maintenance of contractile ring localization
+CCO:P0000307	cell cycle arrest of committed forebrain neuronal progenitor cell
+CCO:P0000308	cell cycle process
+CCO:P0000309	cell cycle phase
+CCO:P0000310	spindle elongation
+CCO:P0000311	spindle midzone assembly
+CCO:P0000312	chromosome separation
+CCO:P0000313	distributive segregation
+CCO:P0000314	regulation of spindle elongation
+CCO:P0000315	regulation of mitotic spindle elongation
+CCO:T0000001	Tetrapoda organism
+CCO:T0000002	Ascomycota organism
+CCO:T0000003	Theria organism
+CCO:T0000004	Homo sapiens organism
+CCO:T0000005	Coelomata organism
+CCO:T0000006	Euteleostomi organism
+CCO:T0000007	rosids organism
+CCO:T0000008	Schizosaccharomyces organism
+CCO:T0000009	Streptophyta organism
+CCO:T0000010	Magnoliophyta organism
+CCO:T0000011	organism
+CCO:T0000012	Viridiplantae organism
+CCO:T0000013	Schizosaccharomycetales organism
+CCO:T0000014	Saccharomycetales organism
+CCO:T0000015	eudicotyledons organism
+CCO:T0000016	Saccharomyces cerevisiae organism
+CCO:T0000017	Schizosaccharomyces pombe organism
+CCO:T0000018	Euphyllophyta organism
+CCO:T0000019	Saccharomyces organism
+CCO:T0000020	Metazoa organism
+CCO:T0000021	Homo/Pan/Gorilla group organism
+CCO:T0000022	Brassicales organism
+CCO:T0000023	Embryophyta organism
+CCO:T0000024	Schizosaccharomycetes organism
+CCO:T0000025	Fungi organism
+CCO:T0000026	Teleostomi organism
+CCO:T0000027	Brassicaceae organism
+CCO:T0000028	Primates organism
+CCO:T0000029	Hominoidea organism
+CCO:T0000030	Tracheophyta organism
+CCO:T0000031	Spermatophyta organism
+CCO:T0000032	Eukaryota organism
+CCO:T0000033	Arabidopsis thaliana organism
+CCO:T0000034	Saccharomycetaceae organism
+CCO:T0000035	Bilateria organism
+CCO:T0000036	Vertebrata organism
+CCO:T0000037	core eudicotyledons organism
+CCO:T0000038	Saccharomycotina organism
+CCO:T0000039	Saccharomycetes organism
+CCO:T0000040	cellular organisms organism
+CCO:T0000041	Fungi/Metazoa group organism
+CCO:T0000042	Amniota organism
+CCO:T0000043	Deuterostomia organism
+CCO:T0000044	Craniata organism
+CCO:T0000045	Chordata organism
+CCO:T0000046	Catarrhini organism
+CCO:T0000047	Simiiformes organism
+CCO:T0000048	Eumetazoa organism
+CCO:T0000049	Gnathostomata organism
+CCO:T0000050	Sarcopterygii organism
+CCO:T0000051	Streptophytina organism
+CCO:T0000052	Homo organism
+CCO:T0000053	Euarchontoglires organism
+CCO:T0000054	Schizosaccharomycetaceae organism
+CCO:T0000055	Mammalia organism
+CCO:T0000056	Eutheria organism
+CCO:T0000057	Arabidopsis organism
+CCO:T0000058	Hominidae organism
+CCO:T0000059	Haplorrhini organism
+CCO:T0000060	eurosids II organism
+CCO:U0000000	cell-cycle entity
+CCO:U0000001	cell-cycle continuant
+CCO:U0000002	cell-cycle process
+CCO:U0000003	biopolymer
+CCO:U0000004	gene
+CCO:U0000005	protein
+CCO:U0000006	transcript
+CCO:U0000007	cell cycle protein
+CCO:U0000008	cell cycle gene
+CCO:U0000009	interaction
+CCO:U0000010	complex
+CCO:U0000011	modified protein
+CCO:U0000012	cell cycle modified protein
+CCO:U0000030	modified protein
+CCO:Y0000025	physical association