diff README.md @ 0:b2471db454a0 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author iuc
date Fri, 10 Nov 2017 11:32:46 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md	Fri Nov 10 11:32:46 2017 -0500
@@ -0,0 +1,53 @@
+# README
+
+ONTO-Toolkit is a collection of Galaxy tools for managing ontologies 
+that are represented in the OBO flat file format (spec 1.2 and 1.4). 
+
+Those tools are basically wrappers around the most commonly used tools 
+provided by the ONTO-PERL suite.
+
+See also:
+
+  1. ONTO-PERL: An API supporting the development and analysis of bio-ontologies
+     Antezana E, Egana M, De Baets B, Kuiper M, Mironov V.
+     Bioinformatics 2008; doi: 10.1093/bioinformatics/btn042
+     
+  2. ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies
+     Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M.
+     BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8
+
+  3. OPPL-Galaxy: Enhancing ontology exploitation in Galaxy with OPPL.
+     Egana M, Fernandez-Breis JT, Antezana E.
+     Semantic Web Applications and Tools for Life Sciences (SWAT4LS), London, UK (2011)
+
+
+## CITING ONTO-Toolkit
+
+If you use ONTO-Toolkit in your work, you are kindly requested to cite:
+
+    ONTO-Toolkit: A set of Galaxy tools to deal with OBO-formatted ontologies
+    Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M.
+    BMC Bioinformatics 2010, 11(Suppl 12):S8 doi:10.1186/1471-2105-11-S12-S8
+
+
+## COPYRIGHT AND LICENCE
+
+Copyright (c) 2010-2014 Erick Antezana and Bjoern Gruening.
+OONTO-Toolkit is free software; you can redistribute it and/or
+modify it under the terms GPL3+, see the additional LICENSE file.
+
+
+
+## INSTALLATION
+
+It is recommended to install this wrapper via the `Galaxy Tool Shed`.
+
+.. _`Galaxy Tool Shed`: http://toolshed.g2.bx.psu.edu/view/bgruening/onto_perl_toolkit
+
+
+## History
+
+- v1.41.0: Initial release, forked from https://toolshed.g2.bx.psu.edu/view/erick-antezana/onto-toolkit 
+with kind permission from Erick Antezana, who is the main developer of the underlying PERL library.
+
+