Mercurial > repos > iuc > onto_tk_term_id_vs_term_name
view get_term_id_vs_term_name.xml @ 0:b2471db454a0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:32:46 -0500 |
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<tool id="onto_tk_term_id_vs_term_name" name="Get all the term IDs and term names" version="@VERSION@.0"> <description>of a given OBO ontology</description> <macros> <import>onto_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="aggressive"> get_term_id_vs_term_name.pl -f '$input' > '$output' </command> <inputs> <expand macro="input_ontology" /> </inputs> <outputs> <data format="tabular" name="output"> <actions> <action name="column_names" type="metadata" default="term ID,term name" /> </actions> </data> </outputs> <tests> <test> <param name="input" value="pre_cco_core.obo"/> <output name="output" file="term_id_vs_term_name.tab"/> </test> </tests> <help> .. class:: infomark Generates a flat file with two columns (TAB separated) with the term_id and term_name from the elements of the given OBO ontology. **Example** If you ask for the term IDs and terms names of the Gene Ontology, you will get:: GO:0050129 N-formylglutamate deformylase activity GO:0051663 oocyte nucleus localization involved in oocyte dorsal/ventral axis specification GO:0051712 positive regulation of killing of cells of another organism GO:0033972 proclavaminate amidinohydrolase activity GO:0032513 negative regulation of protein phosphatase type 2B activity GO:0008711 ADP-L-glycero-D-manno-heptose synthase activity GO:0006285 base-excision repair, AP site formation GO:0043527 tRNA methyltransferase complex ... ... </help> <expand macro="citations" /> </tool>