Mercurial > repos > iuc > openalex_explorer
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/openalex commit 7bac5b8acf6091006591be468a252e57793db4d8
| author | iuc |
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| date | Sat, 31 May 2025 12:25:39 +0000 |
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Title DOI Is_OA Transforming Clinical Research: The Power of High-Throughput Omics Integration https://doi.org/10.3390/proteomes12030025 True Database resources of the National Center for Biotechnology Information in 2025 https://doi.org/10.1093/nar/gkae979 True The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells https://doi.org/10.1016/j.chembiol.2024.11.009 True The cell colony development is connected with the accumulation of embryogenesis-related proteins and dynamic distribution of cell wall components in in vitro cultures of Fagopyrum tataricum and Fagopyrum esculentum https://doi.org/10.1186/s12870-025-06119-3 True 16S rRNA sequencing reveals synergistic effects of silkworm feces and earthworms on soil microbial diversity and resilience under elevated temperatures https://doi.org/10.1016/j.apsoil.2025.105952 False Evolution of sexual systems and regressive evolution in <i>Riccia</i> https://doi.org/10.1111/nph.20454 True Applying the FAIR Principles to computational workflows https://doi.org/10.1038/s41597-025-04451-9 True A case for global standardisation of genomics and wastewater-based epidemiology https://doi.org/10.1016/j.lanmic.2025.101092 True Bioactive Polyphenolic Compounds from Propolis of Tetragonula carbonaria in the Gibberagee Region, New South Wales, Australia https://doi.org/10.3390/foods14060965 True Comparative genomics reveals genetic diversity and differential metabolic potentials of the species of Arachnia and suggests reclassification of Arachnia propionica E10012 (=NBRC_14587) as novel species https://doi.org/10.1007/s00203-025-04302-6 False A novel <i>Erwiniaceae</i> gut symbiont modulates gene expression of the intracellular bacterium <i>Cardinium</i> in the stored product mite <i>Tyrophagus putrescentiae</i> https://doi.org/10.1128/msphere.00879-24 True Playbook workflow builder: Interactive construction of bioinformatics workflows https://doi.org/10.1371/journal.pcbi.1012901 True Quiescent cell re-entry is limited by macroautophagy-induced lysosomal damage https://doi.org/10.1016/j.cell.2025.03.009 False Targets of the transcription factor Six1 identify previously unreported candidate deafness genes https://doi.org/10.1242/dev.204533 True iNAP 2.0: Harnessing metabolic complementarity in microbial network analysis https://doi.org/10.1002/imt2.235 True A Novel Bacitracin-like Peptide from Mangrove-Isolated Bacillus paralicheniformis NNS4-3 against MRSA and Its Genomic Insights https://doi.org/10.3390/antibiotics13080716 True Learning and teaching biological data science in the Bioconductor community https://doi.org/10.1371/journal.pcbi.1012925 True Investigating proteogenomic divergence in patient-derived xenograft models of ovarian cancer https://doi.org/10.1038/s41598-024-84874-3 True Three mitochondrial genomes of Kibakoganea Nagai, 1984 (Coleoptera: Scarabaeidae: Rutelinae) and phylogenetic relationship of Rutelini https://doi.org/10.1016/j.aspen.2024.102369 False Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection https://doi.org/10.1186/s12864-024-11182-5 True Comparative Analysis of Seventeen Mitochondrial Genomes of Mileewinae Leafhoppers, Including the Unique Species <i>Mileewa digitata</i> (Hemiptera: Cicadellidae: Mileewinae) From Xizang, China, and New Insights Into Phylogenetic Relationships Within Mileewini https://doi.org/10.1002/ece3.70830 True Reproducible research policies and software/data management in scientific computing journals: a survey, discussion, and perspectives https://doi.org/10.3389/fcomp.2024.1491823 True Investigation of Exome-Wide Tumor Heterogeneity on Colorectal Tissue-Based Single Cells https://doi.org/10.3390/ijms26020737 True The central clock drives metabolic rhythms in muscle stem cells https://doi.org/10.1101/2025.01.15.633124 True Bone Marrow Stromal Cells Generate a Pro-Healing Inflammasome When Cultured on Titanium–Aluminum–Vanadium Surfaces with Microscale/Nanoscale Structural Features https://doi.org/10.3390/biomimetics10010066 True Holzapfeliella saturejae sp. nov. isolated from flowers of winter savoury Satureja montana L. https://doi.org/10.1099/ijsem.0.006654 False Validating a clinically based MS-MLPA threshold through comparison with Sanger sequencing in glioblastoma patients https://doi.org/10.1186/s13148-025-01822-2 True Fine-tuning mechanical constraints uncouple patterning and gene expression in murine pseudo-embryos https://doi.org/10.1101/2025.01.28.635012 True Integrative analysis of patient-derived tumoroids and ex vivo organoid modeling of ARID1A loss in bladder cancer reveals therapeutic molecular targets https://doi.org/10.1016/j.canlet.2025.217506 True Predicting coarse-grained representations of biogeochemical cycles from metabarcoding data https://doi.org/10.1101/2025.01.30.635649 True Transcriptome atlases of rat brain regions and their adaptation to diabetes resolution following gastrectomy in the Goto-Kakizaki rat https://doi.org/10.1186/s13041-025-01176-z True Comparative Chloroplast Genomics and Phylogeny of Crinum brachynema (Amaryllidaceae): A Narrow Endemic Geophyte of the Western Ghats of India https://doi.org/10.1007/s11105-025-01536-y False Guidance framework to apply best practices in ecological data analysis: lessons learned from building Galaxy-Ecology https://doi.org/10.1093/gigascience/giae122 True Association of escitalopram-induced shifts in gut microbiota and sphingolipid metabolism with depression-like behavior in wistar-kyoto rats https://doi.org/10.1038/s41398-025-03277-8 True RBM43 controls PGC1α translation and a PGC1α-STING signaling axis https://doi.org/10.1016/j.cmet.2025.01.013 False Two transmembrane transcriptional regulators coordinate to activate chitin-induced natural transformation in Vibrio cholerae https://doi.org/10.1371/journal.pgen.1011606 True Biodiversity of strains belonging to the freshwater genus Aquirufa in a riparian forest restoration area in Salzburg, Austria, with a focus on the description of Aquirufa salirivi sp. nov. and Aquirufa novilacunae sp. nov https://doi.org/10.1007/s10123-025-00642-x True Aquirufa esocilacus sp. nov., Aquirufa originis sp. nov., Aquirufa avitistagni, and Aquirufa echingensis sp. nov. discovered in small freshwater habitats in Austria during a citizen science project https://doi.org/10.1007/s00203-025-04275-6 True Metatranscriptomes of activated sludge microbiomes from saline wastewater treatment plant https://doi.org/10.1038/s41597-025-04682-w True High-Throughput Sequencing Enables Rapid Analyses of Nematode Mitochondrial Genomes from an Environmental Sample https://doi.org/10.3390/pathogens14030234 True Hydrogen Radical Chemistry at High-Symmetry {2Fe2S} Centers Probed Using a Muonium Surrogate https://doi.org/10.1021/acs.inorgchem.4c05126 True Isolation and characterization of fMGyn-Pae01, a phiKZ-like jumbo phage infecting Pseudomonas aeruginosa https://doi.org/10.1186/s12985-025-02679-w True A single amino acid variant in the variable region I of AAV capsid confers liver detargeting https://doi.org/10.1101/2025.03.04.641478 True Transposon insertion causes ctnnb2 transcript instability that results in the maternal effect zebrafish ichabod (ich) mutation https://doi.org/10.1101/2025.02.28.640854 True Comprehensive identification of hub mRNAs and lncRNAs in colorectal cancer using galaxy: an in silico transcriptome analysis https://doi.org/10.1007/s12672-025-02026-z True Phylogenomic Analysis Reveals Evolutionary Relationships of Tropical Drosophilidae: From <i>Drosophila</i> to <i>Scaptodrosophila</i> https://doi.org/10.1002/ece3.71100 True Genome sequencing and identification of candidate variants for a red/black color polymorphism in tilapia (Oreochromis spp.) https://doi.org/10.1016/j.aquaculture.2025.742411 True Higher Order Volatile Fatty Acid Metabolism and Atypical Polyhydroxyalkanoate Production in Fermentation-Enhanced Biological Phosphorus Removal https://doi.org/10.1016/j.watres.2025.123503 True Phosphorelay changes and plasticity underlie the life history evolution of Bacillus subtilis sporulation and germination in serial batch culture https://doi.org/10.1099/mic.0.001540 False Comammox Nitrospira dominates the nitrifying bacterial community in the external canister biofilter in the tank fish farm https://doi.org/10.1016/j.jwpe.2025.107494 False