# HG changeset patch # User iuc # Date 1666906051 0 # Node ID 4f1acbf176182754e11a8982b2ef1181e3ce2d6f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/optdoe commit ef03bd3baa194ea25b29a8e87d0cb0faab56f913 diff -r 000000000000 -r 4f1acbf17618 optdoe.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/optdoe.xml Thu Oct 27 21:27:31 2022 +0000 @@ -0,0 +1,249 @@ + + Combine selected genetic parts and enzyme variants for the desired pathways + + 0 + 2.0.2 + + + doebase + + + + +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

+ + + + + + + + + + + + + + + + + `_ for more codons. + +Output +------ + +* **Constructs**\ : Output SBOL file. It contains some combinations of constructs according to the algorithm described above. + +Project Link +------------ + +* `Original Project `_ + +License +------- + +`MIT `_ + +Acknowledgments +--------------- + +* Joan Hérisson +* Thomas Duigou + ]]> + + + + \ No newline at end of file diff -r 000000000000 -r 4f1acbf17618 test-data/constructs.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/constructs.xml Thu Oct 27 21:27:31 2022 +0000 @@ -0,0 +1,6718 @@ + + + + false + 9 + + + lacO + annotation2438102 + + + + 1 + + + + + 1 + 55 + 39 + + range2438102 + + + + + + + 26442 + BBa_K1847014 + 2015-08-25T11:00:00Z + + 2015-08-26T09:07:45Z + + _2273_ + https://synbiohub.org/public/igem/BBa_K1847014/1 + Promoter regulated by LacI. + 26442 + PlacUV5 + + + + + plac UV5 + + + + range2438101 + + 1 + + 31 + + + 1 + + + annotation2438101 + + + 1 + + + 1 + + + false + + + Synthetic synthesis. + Anna Fomitcheva, Lisa Baumgartner + + + + false + false + + + false + 2006-10-31T12:00:00Z + + + BBa_J56012 + 1 + + + false + 98 + Matt Eames + 2015-08-31T03:22:59Z + + _79_98_ + + 0 + + 1132 + https://synbiohub.org/public/igem/BBa_J56012/1 + Ptrc + + Synthesized by DNA 2.0 + false + false + + + Seuqence is inverted by the FimE protein. Inside recognition sequence is a Ptrc promoter sequence. Switch is irreversible. + Not in stock + None + + + + + + + + + + + + range1932219 + 1168 + 1156 + + 1 + + + + + annotation1932219 + RBS + 1 + + + 0 + + + annotation1932227 + + + + + 1322 + + range1932227 + 1 + 1303 + + + + + direct repeat + 1 + + + + + + false + + + + promoter region + + + 1 + + annotation1932220 + + + + + 1192 + 1 + range1932220 + + 1173 + + + + + + + BBa_I50041 + + + + + + + 1219 + + 1224 + range1932224 + 1 + + + + + + annotation1932224 + Mutated SpeI site + + 1 + + + + + + + + + 1 + + + + 1301 + range1932226 + 1 + 1282 + + + + + + + annotation1932226 + direct repeat + + + + + + terminator + + + range1932235 + 1 + + 1963 + + 1992 + + + + + + + 1 + + annotation1932235 + + + pSC101 origin of replication which is supposed to have low copy number. This was the origin used in Michael Elowitz's repressilator and in Bujard's pZS4Int-1 vector with mutations introduced to eliminate a SpeI site. It is also the origin of replication in pSB4* series plasmids. This part is the reverse copy of BBa_I50040. + false + + https://synbiohub.org/public/igem/BBa_I50041/1 + + 1 + + + annotation1932217 + + + 1154 + + + range1932217 + 1 + 1176 + + + + + + + 1 + inverted repeat + + + + + + + RBS + 1 + + + + + annotation1932218 + + + + 1154 + 1159 + + range1932218 + + + 1 + + + + + + + + + + + + + 1152 + 1 + range1932216 + + 202 + + + + repA + 1 + + + annotation1932216 + + + + + + + + + + range2080858 + 1 + 288 + + 288 + + + + + 1 + annotation2080858 + difference from canonical pSC101 sequence in Genbank + + + + + 2006-03-13T12:00:00Z + BBR1 + + + annotation2080859 + + + + 1 + + + + + 1 + + 383 + + 383 + + range2080859 + + + difference from canonical pSC101 sequence in Genbank + + + + + annotation1932233 + + + + + range1932233 + + 1880 + 1876 + 1 + + + + + + Tn3 integration site + 1 + + + + + + + false + + + AT rich region + + + range1932228 + 1 + 1321 + + + + + 1403 + + + + 1 + + + annotation1932228 + + + + + + + + + + + 1 + 1210 + + range1932223 + + 1205 + + + + + annotation1932223 + + rep promoter -35 + + 1 + + + + + inverted repeat + + + + + annotation1932221 + + + + 1179 + range1932221 + + + 1 + 1200 + + + + 1 + + + + + annotation1932222 + + + + rep promoter -10 + 1 + + + 1188 + + + + 1 + range1932222 + + 1183 + + + + + + 126 + + + + 1 + difference from canonical pSC101 sequence in Genbank + + + 126 + range2080857 + + 1 + + + 126 + + + + + annotation2080857 + + + + + + + + + + + + range1932225 + 1250 + 1 + 1269 + + + + + + direct repeat + + 1 + + + annotation1932225 + + + + + putative polyA + + + + + + 91 + + 76 + 1 + + + range1932215 + + + + + 1 + annotation1932215 + + + false + + + + + difference from canonical pSC101 sequence in Genbank + 1 + + + + + + 36 + 1 + 36 + + + + range2080856 + + + annotation2080856 + + + 2015-08-31T04:07:42Z + 45 + + Reshma Shetty + Not in stock + + + + + + + 1 + annotation1932232 + inverted repeat + + + range1932232 + + 1873 + + + 1857 + + 1 + + + + + + + + + annotation1932231 + + + + 1 + + + + 1846 + range1932231 + 1823 + + + + 1 + + inverted repeat + + + + + annotation1932229 + + + + + + 1901 + range1932229 + + 1534 + + + 1 + + + + 1 + + par region + + + + + + + + + range1932234 + 1 + + 1899 + + 1886 + + + annotation1932234 + + 1 + + + inverted repeat + + + + + + + + + + annotation1932230 + + + range1932230 + 1817 + + + + + 1 + 1800 + + + inverted repeat + 1 + + + + + + _41_6_ + + + + _41_ + 2007-04-10T11:00:00Z + 2015-08-31T04:07:42Z + 0 + https://synbiohub.org/public/igem/BBa_I50032/1 + p15A + Not in stock + + + + BBa_I50032 + false + false + + + p15A origin of replication which is supposed to have low to medium copy number. It is also the origin of replication in pSB3* series plasmids. + The boundaries of this part are quite liberal to ensure that this part is a functional origin. + + false + + + annotation1928307 + + + 399 + 1223 + 1 + + range1928307 + + + + + + + 1 + + + + p15A origin of replication + + + + + repeat region + + + + + 1 + 1223 + 1450 + + + range1928308 + + + annotation1928308 + 1 + + + + + + + + false + + This part was constructed by PCR amplification of pSB3K3-P1010. + 70 + 126 + + Reshma Shetty + 1 + + + + ColE1 + 0 + + Composite registry part derived from J64100 and B0025 + 98 + + + 1 + + + annotation1931324 + + suffix + + + + + 275 + + + 1 + 295 + + range1931324 + + + + + + 2007-04-13T11:00:00Z + _98_ + false + 88 + false + Jeffrey J Tabor + + + + Not in stock + https://synbiohub.org/public/igem/BBa_J64101/1 + + + 1 + + + + + + 6 + + + 25 + + 1 + range1931321 + + + + G00100 + + annotation1931321 + + + false + + 2015-05-08T01:08:17Z + BBa_J64101 + ColE1 biobrick plasmid with backward terminator in MCS + None + + + + + + + 1 + + + 124 + 145 + + range1931322 + + + prefix + 1 + + + annotation1931322 + + + + + + + + + + 431 + 1 + 450 + + range1931325 + + + + + G00101 + + + 1 + annotation1931325 + + + + + + + B0025 + + + + range1931323 + + 274 + + 146 + 1 + + + + 1 + + + + + annotation1931323 + + + + false + + + + + + G00101 + annotation1931326 + + + 1 + + 502 + + + range1931326 + + 483 + + + + + 1 + + + + + 1 + BBa_J64100 + + + + annotation1931320 + + + + + range1931320 + 1 + 1 + + 2800 + + + + + + + + 1 + + + + This is the wild-type cassette for ampicillin resistance. + 7 + robertb + + false + + 2004-07-18T11:00:00Z + + Ampicillin Resistance Cassette + 1 + + Amp Cas + + + 1 + + + + + 861 + + 1 + + 1 + range902300 + + + + annotation902300 + + Ampicillin Resistance + + + + + false + + false + 2015-08-31T04:07:36Z + false + + + Not in stock + + 0 + + _6_ + 159 + + BBa_I13800 + + + + + 0 + + + 1 + PolyA + + + + 1 + + + 1 + + 9 + range1898431 + + + + + + annotation1898431 + + + + 745 + + Bidirectional, with the reverse estimated to be less effective than the forward. Has a polyA tail of 9 residues. + 2006-08-30T11:00:00Z + false + + + + true + 1 + + + + + 1 + annotation1898429 + + + modified thr terminator + + + + + range1898429 + 1 + 10 + 31 + + + + + + + + + + + + B1006 + + + 1 + + 39 + + + + 1 + range1898428 + + + + 1 + + + annotation1898428 + + + false + + 41 + modified E. coli thr terminator, replaced all A-T pairs in stem with C-G pairs + + + Artificial terminator, estimated %T~>90% +*8bp stem, 6nt loop +*Bidirectional, estimated reverse %T~>90% + BBa_B1006 + Ter + + + annotation1898430 + PolyA + 1 + + + + 1 + range1898430 + + + 39 + 32 + + + + + + + + + + Haiyao Huang + _41_ + true + 2015-08-31T04:07:21Z + Released HQ 2013 + + + In stock + https://synbiohub.org/public/igem/BBa_B1006/1 + + + + P21684 + P21684 + 1 + P21684 + + + + + + P21683 + 1 + P21683 + + P21683 + + + + + + + P21685 + P21685 + P21685 + + + 1 + + + + + 1 + + P21687 + P21687 + + P21687 + + + + + + 1 + P21688 + + + P21688 + P21688 + + + + + constraint_6 + + + + 1 + + + + + + + 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tcgagtgccacctgacgtctaagaaaccattattatcatgacattaacctataaaaataggcgtatcacgaggcagaatttcagataaaaaaaatccttagctttcgctaaggatgatttctggaattcgcggccgcttctagagtataaacgcagaaaggcccacccgaaggtgagccagtgtgactctagtagagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggtactagtagcggccgctgcagtccggcaaaaaaacgggcaaggtgtcaccaccctgccctttttctttaaaaccgaaaagattacttcgcgttatgcaggcttcctcgctcactgactcgctgcgctcggtcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatcctagggcgttcggctgcggcgagcggtatcagctcactcaaaggcggtaatacggttatccacagaatcaggggataacgcaggaaagaacatgtgagcaaaaggccagcaaaaggccaggaaccgtaaaaaggccgcgttgctggcgtttttccataggctccgcccccctgacgagcatcacaaaaatcgacgctcaagtcagaggtggcgaaacccgacaggactataaagataccaggcgtttccccctggaagctccctcgtgcgctctcctgttccgaccctgccgcttaccggatacctgtccgcctttctcccttcgggaagcgtggcgctttctcaatgctcacgctgtaggtatctcagttcggtgtaggtcgttcgctccaagctgggctgtgtgcacgaaccccccgttcagcccgaccgctgcgccttatccggtaactatcgtcttgagtccaacccggtaagacacgacttatcgccactggcagcagccactggtaacaggattagcagagcgaggtatgtaggcggtgctacagagttcttgaagtggtggcctaactacggctacactagaaggacagtatttggtatctgcgctctgctgaagccagttaccttcggaaaaagagttggtagctcttgatccggcaaacaaaccaccgctggtagcggtggtttttttgtttgcaagcagcagattacgcgcagaaaaaaaggatctcaagaagatcctttgatcttttctacggggtctgacgctcagtggaacgaaaactcacgttaagggattttggtcatgacttgtgcttggattctcaccaataaaaaacgcccggcggcaaccgagcgttctgaacaaatccagatggagttctgaggtcattactggatctatcaacaggagtccaagcgagctcgatatcaaattacgccccgccctgccactcatcgcagtactgttgtaattcattaagcattctgccgacatggaagccatcacagacggcatgatgaacctgaatcgccagcggcatcagcaccttgtcgccttgcgtataatatttgcccatggtgaaaacgggggcgaagaagttgtccatattggccacgtttaaatcaaaactggtgaaactcacccagggattggctgagacgaaaaacatattctcaataaaccctttagggaaataggccaggttttcaccgtaacacgccacatcttgcgaatatatgtgtagaaactgccggaaatcgtcgtggtattcactccagagcgatgaaaacgtttcagtttgctcatggaaaacggtgtaacaagggtgaacactatcccatatcaccagctcaccgtctttcattgccatacgaaattccggatgagcattcatcaggcgggcaagaatgtgaataaaggccggataaaacttgtgcttatttttctttacggtctttaaaaaggccgtaatatccagctgaacggtctggttataggtacattgagcaactgactgaaatgcctcaaaatgttctttacgatgccattgggatatatcaacggtggtatatccagtgatttttttctccattttagcttccttagctcctgaaaatctcgataactcaaaaaatacgcccggtagtgatcttatttcattatggtgaaagttggaacctcttacgtgccgatcaacgtctcattttcgccagatatcgacgtctaagaaaccattattatcatgacattaacctataaaaataggcgtatcacgaggccctttcgtcttcacc + + + + + + + + 1 + + + ttaccaatgcttaatcagtgaggcacctatctcagcgatctgtctatttcgttcatccatagttgcctgactccccgtcgtgtagataactacgatacgggagggcttaccatctggccccagtgctgcaatgataccgcgagacccacgctcaccggctccagatttatcagcaataaaccagccagccggaagggccgagcgcagaagtggtcctgcaactttatccgcctccatccagtctattaattgttgccgggaagctagagtaagtagttcgccagttaatagtttgcgcaacgttgttgccattgctacaggcatcgtggtgtcacgctcgtcgtttggtatggcttcattcagctccggttcccaacgatcaaggcgagttacatgatcccccatgttgtgcaaaaaagcggttagctccttcggtcctccgatcgttgtcagaagtaagttggccgcagtgttatcactcatggttatggcagcactgcataattctcttactgtcatgccatccgtaagatgcttttctgtgactggtgagtactcaaccaagtcattctgagaatagtgtatgcggcgaccgagttgctcttgcccggcgtcaatacgggataataccgcgccacatagcagaactttaaaagtgctcatcattggaaaacgttcttcggggcgaaaactctcaaggatcttaccgctgttgagatccagttcgatgtaacccactcgtgcacccaactgatcttcagcatcttttactttcaccagcgtttctgggtgagcaaaaacaggaaggcaaaatgccgcaaaaaagggaataagggcgacacggaaatgttgaatactcat + BBa_I13800_sequence + + + + + + + 1 + + aaaaaaaaaccccgcccctgacagggcggggtttttttt + + BBa_B1006_sequence + + + + ATGACCGTGTGCGCGAAAAAACATGTGCATCTGACCCGCGATGCGGCGGAACAGCTGCTGGCGGATATTGATCGCCGCCTGGATCAGCTGCTGCCGGTGGAAGGCGAACGCGATGTGGTGGGCGCGGCGATGCGCGAAGGCGCGCTGGCGCCGGGCAAACGCATTCGCCCGATGCTGCTGCTGCTGACCGCGCGCGATCTGGGCTGCGCGGTGAGCCATGATGGCCTGCTGGATCTGGCGTGCGCGGTGGAAATGGTGCATGCGGCGAGCCTGATTCTGGATGATATGCCGTGCATGGATGATGCGAAACTGCGCCGCGGCCGCCCGACCATTCATAGCCATTATGGCGAACATGTGGCGATTCTGGCGGCGGTGGCGCTGCTGAGCAAAGCGTTTGGCGTGATTGCGGATGCGGATGGCCTGACCCCGCTGGCGAAAAACCGCGCGGTGAGCGAACTGAGCAACGCGATTGGCATGCAGGGCCTGGTGCAGGGCCAGTTTAAAGATCTGAGCGAAGGCGATAAACCGCGCAGCGCGGAAGCGATTCTGATGACCAACCATTTTAAAACCAGCACCCTGTTTTGCGCGAGCATGCAGATGGCGAGCATTGTGGCGAACGCGAGCAGCGAAGCGCGCGATTGCCTGCATCGCTTTAGCCTGGATCTGGGCCAGGCGTTTCAGCTGCTGGATGATCTGACCGATGGCATGACCGATACCGGCAAAGATAGCAACCAGGATGCGGGCAAAAGCACCCTGGTGAACCTGCTGGGCCCGCGCGCGGTGGAAGAACGCCTGCGCCAGCATCTGCAGCTGGCGAGCGAACATCTGAGCGCGGCGTGCCAGCATGGCCATGCGACCCAGCATTTTATTCAGGCGTGGTTTGATAAAAAACTGGCGGCGGTGAGC + 1 + + + P21684 + + + + ATGAACAACCCGAGCCTGCTGAACCATGCGGTGGAAACCATGGCGGTGGGCAGCAAAAGCTTTGCGACCGCGAGCAAACTGTTTGATGCGAAAACCCGCCGCAGCGTGCTGATGCTGTATGCGTGGTGCCGCCATTGCGATGATGTGATTGATGATCAGACCCTGGGCTTTCAGGCGCGCCAGCCGGCGCTGCAGACCCCGGAACAGCGCCTGATGCAGCTGGAAATGAAAACCCGCCAGGCGTATGCGGGCAGCCAGATGCATGAACCGGCGTTTGCGGCGTTTCAGGAAGTGGCGATGGCGCATGATATTGCGCCGGCGTATGCGTTTGATCATCTGGAAGGCTTTGCGATGGATGTGCGCGAAGCGCAGTATAGCCAGCTGGATGATACCCTGCGCTATTGCTATCATGTGGCGGGCGTGGTGGGCCTGATGATGGCGCAGATTATGGGCGTGCGCGATAACGCGACCCTGGATCGCGCGTGCGATCTGGGCCTGGCGTTTCAGCTGACCAACATTGCGCGCGATATTGTGGATGATGCGCATGCGGGCCGCTGCTATCTGCCGGCGAGCTGGCTGGAACATGAAGGCCTGAACAAAGAAAACTATGCGGCGCCGGAAAACCGCCAGGCGCTGAGCCGCATTGCGCGCCGCCTGGTGCAGGAAGCGGAACCGTATTATCTGAGCGCGACCGCGGGCCTGGCGGGCCTGCCGCTGCGCAGCGCGTGGGCGATTGCGACCGCGAAACAGGTGTATCGCAAAATTGGCGTGAAAGTGGAACAGGCGGGCCAGCAGGCGTGGGATCAGCGCCAGAGCACCACCACCCCGGAAAAACTGACCCTGCTGCTGGCGGCGAGCGGCCAGGCGCTGACCAGCCGCATGCGCGCGCATCCGCCGCGCCCGGCGCATCTGTGGCAGCGCCCGCTG + 1 + + P21683 + + + P21685 + + ATGAAACCGACCACCGTGATTGGCGCGGGCTTTGGCGGCCTGGCGCTGGCGATTCGCCTGCAGGCGGCGGGCATTCCGGTGCTGCTGCTGGAACAGCGCGATAAACCGGGCGGCCGCGCGTATGTGTATGAAGATCAGGGCTTTACCTTTGATGCGGGCCCGACCGTGATTACCGATCCGAGCGCGATTGAAGAACTGTTTGCGCTGGCGGGCAAACAGCTGAAAGAATATGTGGAACTGCTGCCGGTGACCCCGTTTTATCGCCTGTGCTGGGAAAGCGGCAAAGTGTTTAACTATGATAACGATCAGACCCGCCTGGAAGCGCAGATTCAGCAGTTTAACCCGCGCGATGTGGAAGGCTATCGCCAGTTTCTGGATTATAGCCGCGCGGTGTTTAAAGAAGGCTATCTGAAACTGGGCACCGTGCCGTTTCTGAGCTTTCGCGATATGCTGCGCGCGGCGCCGCAGCTGGCGAAACTGCAGGCGTGGCGCAGCGTGTATAGCAAAGTGGCGAGCTATATTGAAGATGAACATCTGCGCCAGGCGTTTAGCTTTCATAGCCTGCTGGTGGGCGGCAACCCGTTTGCGACCAGCAGCATTTATACCCTGATTCATGCGCTGGAACGCGAATGGGGCGTGTGGTTTCCGCGCGGCGGCACCGGCGCGCTGGTGCAGGGCATGATTAAACTGTTTCAGGATCTGGGCGGCGAAGTGGTGCTGAACGCGCGCGTGAGCCATATGGAAACCACCGGCAACAAAATTGAAGCGGTGCATCTGGAAGATGGCCGCCGCTTTCTGACCCAGGCGGTGGCGAGCAACGCGGATGTGGTGCATACCTATCGCGATCTGCTGAGCCAGCATCCGGCGGCGGTGAAACAGAGCAACAAACTGCAGACCAAACGCATGAGCAACAGCCTGTTTGTGCTGTATTTTGGCCTGAACCATCATCATGATCAGCTGGCGCATCATACCGTGTGCTTTGGCCCGCGCTATCGCGAACTGATTGATGAAATTTTTAACCATGATGGCCTGGCGGAAGATTTTAGCCTGTATCTGCATGCGCCGTGCGTGACCGATAGCAGCCTGGCGCCGGAAGGCTGCGGCAGCTATTATGTGCTGGCGCCGGTGCCGCATCTGGGCACCGCGAACCTGGATTGGACCGTGGAAGGCCCGAAACTGCGCGATCGCATTTTTGCGTATCTGGAACAGCATTATATGCCGGGCCTGCGCAGCCAGCTGGTGACCCATCGCATGTTTACCCCGTTTGATTTTCGCGATCAGCTGAACGCGTATCATGGCAGCGCGTTTAGCGTGGAACCGGTGCTGACCCAGAGCGCGTGGTTTCGCCCGCATAACCGCGATAAAACCATTACCAACCTGTATCTGGTGGGCGCGGGCACCCATCCGGGCGCGGGCATTCCGGGCGTGATTGGCAGCGCGAAAGCGACCGCGGGCCTGATGCTGGAAGATCTGATT + 1 + + + + + ATGCAGCCGCATTATGATCTGATTCTGGTGGGCGCGGGCCTGGCGAACGGCCTGATTGCGCTGCGCCTGCAGCAGCAGCAGCCGGATATGCGCATTCTGCTGATTGATGCGGCGCCGCAGGCGGGCGGCAACCATACCTGGAGCTTTCATCATGATGATCTGACCGAAAGCCAGCATCGCTGGATTGCGCCGCTGGTGGTGCATCATTGGCCGGATTATCAGGTGCGCTTTCCGACCCGCCGCCGCAAACTGAACAGCGGCTATTTTTGCATTACCAGCCAGCGCTTTGCGGAAGTGCTGCAGCGCCAGTTTGGCCCGCATCTGTGGATGGATACCGCGGTGGCGGAAGTGAACGCGGAAAGCGTGCGCCTGAAAAAAGGCCAGGTGATTGGCGCGCGCGCGGTGATTGATGGCCGCGGCTATGCGGCGAACAGCGCGCTGAGCGTGGGCTTTCAGGCGTTTATTGGCCAGGAATGGCGCCTGAGCCATCCGCATGGCCTGAGCAGCCCGATTATTATGGATGCGACCGTGGATCAGCAGAACGGCTATCGCTTTGTGTATAGCCTGCCGCTGAGCCCGACCCGCCTGCTGATTGAAGATACCCATTATATTGATAACGCGACCCTGGATCCGGAATGCGCGCGCCAGAACATTTGCGATTATGCGGCGCAGCAGGGCTGGCAGCTGCAGACCCTGCTGCGCGAAGAACAGGGCGCGCTGCCGATTACCCTGAGCGGCAACGCGGATGCGTTTTGGCAGCAGCGCCCGCTGGCGTGCAGCGGCCTGCGCGCGGGCCTGTTTCATCCGACCACCGGCTATAGCCTGCCGCTGGCGGTGGCGGTGGCGGATCGCCTGAGCGCGCTGGATGTGTTTACCAGCGCGAGCATTCATCATGCGATTACCCATTTTGCGCGCGAACGCTGGCAGCAGCAGGGCTTTTTTCGCATGCTGAACCGCATGCTGTTTCTGGCGGGCCCGGCGGATAGCCGCTGGCGCGTGATGCAGCGCTTTTATGGCCTGCCGGAAGATCTGATTGCGCGCTTTTATGCGGGCAAACTGACCCTGACCGATCGCCTGCGCATTCTGAGCGGCAAACCGCCGGTGCCGGTGCTGGCGGCGCTGCAGGCGATTATGACCACCCATCGC + 1 + + P21687 + + + ATGCTGTGGATTTGGAACGCGCTGATTGTGTTTGTGACCGTGATTGGCATGGAAGTGATTGCGGCGCTGGCGCATAAATATATTATGCATGGCTGGGGCTGGGGCTGGCATCTGAGCCATCATGAACCGCGCAAAGGCGCGTTTGAAGTGAACGATCTGTATGCGGTGGTGTTTGCGGCGCTGAGCATTCTGCTGATTTATCTGGGCAGCACCGGCATGTGGCCGCTGCAGTGGATTGGCGCGGGCATGACCGCGTATGGCCTGCTGTATTTTATGGTGCATGATGGCCTGGTGCATCAGCGCTGGCCGTTTCGCTATATTCCGCGCAAAGGCTATCTGAAACGCCTGTATATGGCGCATCGCATGCATCATGCGGTGCGCGGCAAAGAAGGCTGCGTGAGCTTTGGCTTTCTGTATGCGCCGCCGCTGAGCAAACTGCAGGCGACCCTGCGCGAACGCCATGGCGCGCGCGCGGGCGCGGCGCGCGATGCGCAGGGCGGCGAAGATGAACCGGCGAGCGGCAAA + 1 + P21688 + + + + + James Alastair McLaughlin + 2017-03-06T15:00:00+00:00 + Conversion of the iGEM parts registry to SBOL2.1 + igem2sbol + Chris J. Myers + + iGEM to SBOL conversion + + + + 1 + + diff -r 000000000000 -r 4f1acbf17618 test-data/genes_lycopene.csv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/genes_lycopene.csv Thu Oct 27 21:27:31 2022 +0000 @@ -0,0 +1,9 @@ +Name,Type,Part,Step +P21684,gene,P21684,1 +P21683,gene,P21683,1 +P21683,gene,P21683,2 +P21684,gene,P21684,2 +P21685,gene,P21685,3 +P21683,gene,P21683,3 +P21687,gene,P21687,3 +P21688,gene,P21688,3