comparison test-data/results/Statistics_Overall.csv @ 0:bfb20dbe1309 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f
author iuc
date Tue, 24 Oct 2017 06:40:40 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:bfb20dbe1309
1 Number of genes 2733
2 Number of genes in orthogroups 1938
3 Number of unassigned genes 795
4 Percentage of genes in orthogroups 70.9
5 Percentage of unassigned genes 29.1
6 Number of orthogroups 536
7 Number of species-specific orthogroups 6
8 Number of genes in species-specific orthogroups 97
9 Percentage of genes in species-specific orthogroups 3.5
10 Mean orthogroup size 3.6
11 Median orthogroup size 4.0
12 G50 (assigned genes) 4
13 G50 (all genes) 4
14 O50 (assigned genes) 200
15 O50 (all genes) 299
16 Number of orthogroups with all species present 280
17 Number of single-copy orthogroups 254
18 Date 2017-06-06
19 Orthogroups file Orthogroups.csv
20 Unassigned genes file Orthogroups_UnassignedGenes.csv
21 Per-species statistics Statistics_PerSpecies.csv
22 Overall statistics Statistics_Overall.csv
23 Orthogroups shared between species Orthogroups_SpeciesOverlaps.csv
24
25 Average number of genes per-species in orthogroup Number of orthogroups Percentage of orthogroups Number of genes Percentage of genes
26 <1 222 41.4 510 26.3
27 '1 304 56.7 1270 65.5
28 '2 8 1.5 75 3.9
29 '3 0 0.0 0 0.0
30 '4 0 0.0 0 0.0
31 '5 0 0.0 0 0.0
32 '6 1 0.2 27 1.4
33 '7 0 0.0 0 0.0
34 '8 0 0.0 0 0.0
35 '9 0 0.0 0 0.0
36 '10 0 0.0 0 0.0
37 11-15 1 0.2 56 2.9
38 16-20 0 0.0 0 0.0
39 21-50 0 0.0 0 0.0
40 51-100 0 0.0 0 0.0
41 101-150 0 0.0 0 0.0
42 151-200 0 0.0 0 0.0
43 201-500 0 0.0 0 0.0
44 501-1000 0 0.0 0 0.0
45 '1001+ 0 0.0 0 0.0
46
47 Number of species in orthogroup Number of orthogroups
48 1 6
49 2 172
50 3 78
51 4 280