comparison test-data/results_fromblast/Statistics_Overall.csv @ 0:bfb20dbe1309 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 2da91121887cc148ff398ddc2f56142490a8e22f

0:bfb20dbe1309

Number of genes	2733
Number of genes in orthogroups	1938
Number of unassigned genes	795
Percentage of genes in orthogroups	70.9
Percentage of unassigned genes	29.1
Number of orthogroups	536
Number of species-specific orthogroups	6
Number of genes in species-specific orthogroups	100
Percentage of genes in species-specific orthogroups	3.7
Mean orthogroup size	3.6
Median orthogroup size	4.0
G50 (assigned genes)	4
G50 (all genes)	4
O50 (assigned genes)	199
O50 (all genes)	299
Number of orthogroups with all species present	278
Number of single-copy orthogroups	254
Date	2017-06-08
Orthogroups file	Orthogroups.csv
Unassigned genes file	Orthogroups_UnassignedGenes.csv
Per-species statistics	Statistics_PerSpecies.csv
Overall statistics	Statistics_Overall.csv
Orthogroups shared between species	Orthogroups_SpeciesOverlaps.csv

Average number of genes per-species in orthogroup	Number of orthogroups	Percentage of orthogroups	Number of genes	Percentage of genes
<1	224	41.8	516	26.6
'1	302	56.3	1254	64.7
'2	7	1.3	65	3.4
'3	0	0.0	0	0.0
'4	0	0.0	0	0.0
'5	1	0.2	20	1.0
'6	1	0.2	27	1.4
'7	0	0.0	0	0.0
'8	0	0.0	0	0.0
'9	0	0.0	0	0.0
'10	0	0.0	0	0.0
11-15	1	0.2	56	2.9
16-20	0	0.0	0	0.0
21-50	0	0.0	0	0.0
51-100	0	0.0	0	0.0
101-150	0	0.0	0	0.0
151-200	0	0.0	0	0.0
201-500	0	0.0	0	0.0
501-1000	0	0.0	0	0.0
'1001+	0	0.0	0	0.0

Number of species in orthogroup	Number of orthogroups
1	6
2	177
3	75
4	278