Mercurial > repos > iuc > orthofinder_onlygroups
diff test-data/results_fromblast/Statistics_Overall.tsv @ 5:974d8c28e586 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
| author | iuc |
|---|---|
| date | Mon, 17 Aug 2020 12:59:19 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/results_fromblast/Statistics_Overall.tsv Mon Aug 17 12:59:19 2020 -0400 @@ -0,0 +1,52 @@ +Number of species 4 +Number of genes 2733 +Number of genes in orthogroups 2276 +Number of unassigned genes 457 +Percentage of genes in orthogroups 83.3 +Percentage of unassigned genes 16.7 +Number of orthogroups 622 +Number of species-specific orthogroups 96 +Number of genes in species-specific orthogroups 426 +Percentage of genes in species-specific orthogroups 15.6 +Mean orthogroup size 3.7 +Median orthogroup size 4.0 +G50 (assigned genes) 4 +G50 (all genes) 4 +O50 (assigned genes) 221 +O50 (all genes) 278 +Number of orthogroups with all species present 278 +Number of single-copy orthogroups 249 +Date 2020-08-14 +Orthogroups file Orthogroups.tsv +Unassigned genes file Orthogroups_UnassignedGenes.tsv +Per-species statistics Statistics_PerSpecies.tsv +Overall statistics Statistics_Overall.tsv +Orthogroups shared between species Orthogroups_SpeciesOverlaps.tsv + +Average number of genes per-species in orthogroup Number of orthogroups Percentage of orthogroups Number of genes Percentage of genes +<1 285 45.8 672 29.5 +'1 322 51.8 1352 59.4 +'2 8 1.3 73 3.2 +'3 4 0.6 56 2.5 +'4 0 0.0 0 0.0 +'5 0 0.0 0 0.0 +'6 1 0.2 26 1.1 +'7 0 0.0 0 0.0 +'8 0 0.0 0 0.0 +'9 1 0.2 39 1.7 +'10 0 0.0 0 0.0 +11-15 1 0.2 58 2.5 +16-20 0 0.0 0 0.0 +21-50 0 0.0 0 0.0 +51-100 0 0.0 0 0.0 +101-150 0 0.0 0 0.0 +151-200 0 0.0 0 0.0 +201-500 0 0.0 0 0.0 +501-1000 0 0.0 0 0.0 +'1001+ 0 0.0 0 0.0 + +Number of species in orthogroup Number of orthogroups +1 96 +2 173 +3 75 +4 278