Mercurial > repos > iuc > orthofinder_onlygroups
view test-data/results_fromblast/Statistics_PerSpecies.csv @ 3:1aed170afb2b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit c39323361ef6ba2664646e4476736c80bcd01124"
| author | iuc |
|---|---|
| date | Wed, 18 Dec 2019 15:24:46 -0500 |
| parents | bfb20dbe1309 |
| children |
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Mycoplasma_agalactiae Mycoplasma_gallisepticum Mycoplasma_genitalium Mycoplasma_hyopneumoniae Number of genes 820 763 476 674 Number of genes in orthogroups 503 561 429 445 Number of unassigned genes 317 202 47 229 Percentage of genes in orthogroups 61.3 73.5 90.1 66.0 Percentage of unassigned genes 38.7 26.5 9.9 34.0 Number of orthogroups containing species 430 459 392 416 Percentage of orthogroups containing species 80.2 85.6 73.1 77.6 Number of species-specific orthogroups 3 2 0 1 Number of genes in species-specific orthogroups 34 61 0 5 Percentage of genes in species-specific orthogroups 4.1 8.0 0.0 0.7 Number of genes per-species in orthogroup Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups '0 106 77 144 120 '1 398 427 368 405 '2 21 21 17 6 '3 6 6 5 1 '4 2 2 1 1 '5 2 2 0 1 '6 0 0 0 0 '7 0 0 0 0 '8 0 0 1 2 '9 0 0 0 0 '10 0 0 0 0 11-15 0 0 0 0 16-20 0 0 0 0 21-50 1 0 0 0 51-100 0 1 0 0 101-150 0 0 0 0 151-200 0 0 0 0 201-500 0 0 0 0 501-1000 0 0 0 0 '1001+ 0 0 0 0 Number of genes per-species in orthogroup Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups '0 19.8 14.4 26.9 22.4 '1 74.3 79.7 68.7 75.6 '2 3.9 3.9 3.2 1.1 '3 1.1 1.1 0.9 0.2 '4 0.4 0.4 0.2 0.2 '5 0.4 0.4 0.0 0.2 '6 0.0 0.0 0.0 0.0 '7 0.0 0.0 0.0 0.0 '8 0.0 0.0 0.2 0.4 '9 0.0 0.0 0.0 0.0 '10 0.0 0.0 0.0 0.0 11-15 0.0 0.0 0.0 0.0 16-20 0.0 0.0 0.0 0.0 21-50 0.2 0.0 0.0 0.0 51-100 0.0 0.2 0.0 0.0 101-150 0.0 0.0 0.0 0.0 151-200 0.0 0.0 0.0 0.0 201-500 0.0 0.0 0.0 0.0 501-1000 0.0 0.0 0.0 0.0 '1001+ 0.0 0.0 0.0 0.0 Number of genes per-species in orthogroup Number of genes Number of genes Number of genes Number of genes '0 0 0 0 0 '1 398 427 368 405 '2 42 42 34 12 '3 18 18 15 3 '4 8 8 4 4 '5 10 10 0 5 '6 0 0 0 0 '7 0 0 0 0 '8 0 0 8 16 '9 0 0 0 0 '10 0 0 0 0 11-15 0 0 0 0 16-20 0 0 0 0 21-50 27 0 0 0 51-100 0 56 0 0 101-150 0 0 0 0 151-200 0 0 0 0 201-500 0 0 0 0 501-1000 0 0 0 0 '1001+ 0 0 0 0 Number of genes per-species in orthogroup Percentage of genes Percentage of genes Percentage of genes Percentage of genes '0 0.0 0.0 0.0 0.0 '1 48.5 56.0 77.3 60.1 '2 5.1 5.5 7.1 1.8 '3 2.2 2.4 3.2 0.4 '4 1.0 1.0 0.8 0.6 '5 1.2 1.3 0.0 0.7 '6 0.0 0.0 0.0 0.0 '7 0.0 0.0 0.0 0.0 '8 0.0 0.0 1.7 2.4 '9 0.0 0.0 0.0 0.0 '10 0.0 0.0 0.0 0.0 11-15 0.0 0.0 0.0 0.0 16-20 0.0 0.0 0.0 0.0 21-50 3.3 0.0 0.0 0.0 51-100 0.0 7.3 0.0 0.0 101-150 0.0 0.0 0.0 0.0 151-200 0.0 0.0 0.0 0.0 201-500 0.0 0.0 0.0 0.0 501-1000 0.0 0.0 0.0 0.0 '1001+ 0.0 0.0 0.0 0.0