view test-data/results/Statistics_Overall.csv @ 5:974d8c28e586 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
author iuc
date Mon, 17 Aug 2020 12:59:19 -0400
parents bfb20dbe1309
children
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Number of genes	2733
Number of genes in orthogroups	1938
Number of unassigned genes	795
Percentage of genes in orthogroups	70.9
Percentage of unassigned genes	29.1
Number of orthogroups	536
Number of species-specific orthogroups	6
Number of genes in species-specific orthogroups	97
Percentage of genes in species-specific orthogroups	3.5
Mean orthogroup size	3.6
Median orthogroup size	4.0
G50 (assigned genes)	4
G50 (all genes)	4
O50 (assigned genes)	200
O50 (all genes)	299
Number of orthogroups with all species present	280
Number of single-copy orthogroups	254
Date	2017-06-06
Orthogroups file	Orthogroups.csv
Unassigned genes file	Orthogroups_UnassignedGenes.csv
Per-species statistics	Statistics_PerSpecies.csv
Overall statistics	Statistics_Overall.csv
Orthogroups shared between species	Orthogroups_SpeciesOverlaps.csv

Average number of genes per-species in orthogroup	Number of orthogroups	Percentage of orthogroups	Number of genes	Percentage of genes
<1	222	41.4	510	26.3
'1	304	56.7	1270	65.5
'2	8	1.5	75	3.9
'3	0	0.0	0	0.0
'4	0	0.0	0	0.0
'5	0	0.0	0	0.0
'6	1	0.2	27	1.4
'7	0	0.0	0	0.0
'8	0	0.0	0	0.0
'9	0	0.0	0	0.0
'10	0	0.0	0	0.0
11-15	1	0.2	56	2.9
16-20	0	0.0	0	0.0
21-50	0	0.0	0	0.0
51-100	0	0.0	0	0.0
101-150	0	0.0	0	0.0
151-200	0	0.0	0	0.0
201-500	0	0.0	0	0.0
501-1000	0	0.0	0	0.0
'1001+	0	0.0	0	0.0

Number of species in orthogroup	Number of orthogroups
1	6
2	172
3	78
4	280