Mercurial > repos > iuc > orthofinder_onlygroups
view test-data/results/Statistics_PerSpecies.csv @ 9:b3d25fae5389 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 179e3fd2aeb66484e49e6370e9507e24d118f4ea
| author | iuc |
|---|---|
| date | Mon, 15 Jan 2024 10:18:14 +0000 |
| parents | bfb20dbe1309 |
| children |
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Mycoplasma_agalactiae Mycoplasma_gallisepticum Mycoplasma_genitalium Mycoplasma_hyopneumoniae Number of genes 820 763 476 674 Number of genes in orthogroups 503 561 429 445 Number of unassigned genes 317 202 47 229 Percentage of genes in orthogroups 61.3 73.5 90.1 66.0 Percentage of unassigned genes 38.7 26.5 9.9 34.0 Number of orthogroups containing species 432 462 394 416 Percentage of orthogroups containing species 80.6 86.2 73.5 77.6 Number of species-specific orthogroups 2 3 0 1 Number of genes in species-specific orthogroups 29 63 0 5 Percentage of genes in species-specific orthogroups 3.5 8.3 0.0 0.7 Number of genes per-species in orthogroup Number of orthogroups Number of orthogroups Number of orthogroups Number of orthogroups '0 104 74 142 120 '1 400 429 368 403 '2 22 24 19 9 '3 6 6 5 1 '4 1 0 2 0 '5 2 2 0 1 '6 0 0 0 0 '7 0 0 0 0 '8 0 0 0 2 '9 0 0 0 0 '10 0 0 0 0 11-15 0 0 0 0 16-20 0 0 0 0 21-50 1 0 0 0 51-100 0 1 0 0 101-150 0 0 0 0 151-200 0 0 0 0 201-500 0 0 0 0 501-1000 0 0 0 0 '1001+ 0 0 0 0 Number of genes per-species in orthogroup Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups Percentage of orthogroups '0 19.4 13.8 26.5 22.4 '1 74.6 80.0 68.7 75.2 '2 4.1 4.5 3.5 1.7 '3 1.1 1.1 0.9 0.2 '4 0.2 0.0 0.4 0.0 '5 0.4 0.4 0.0 0.2 '6 0.0 0.0 0.0 0.0 '7 0.0 0.0 0.0 0.0 '8 0.0 0.0 0.0 0.4 '9 0.0 0.0 0.0 0.0 '10 0.0 0.0 0.0 0.0 11-15 0.0 0.0 0.0 0.0 16-20 0.0 0.0 0.0 0.0 21-50 0.2 0.0 0.0 0.0 51-100 0.0 0.2 0.0 0.0 101-150 0.0 0.0 0.0 0.0 151-200 0.0 0.0 0.0 0.0 201-500 0.0 0.0 0.0 0.0 501-1000 0.0 0.0 0.0 0.0 '1001+ 0.0 0.0 0.0 0.0 Number of genes per-species in orthogroup Number of genes Number of genes Number of genes Number of genes '0 0 0 0 0 '1 400 429 368 403 '2 44 48 38 18 '3 18 18 15 3 '4 4 0 8 0 '5 10 10 0 5 '6 0 0 0 0 '7 0 0 0 0 '8 0 0 0 16 '9 0 0 0 0 '10 0 0 0 0 11-15 0 0 0 0 16-20 0 0 0 0 21-50 27 0 0 0 51-100 0 56 0 0 101-150 0 0 0 0 151-200 0 0 0 0 201-500 0 0 0 0 501-1000 0 0 0 0 '1001+ 0 0 0 0 Number of genes per-species in orthogroup Percentage of genes Percentage of genes Percentage of genes Percentage of genes '0 0.0 0.0 0.0 0.0 '1 48.8 56.2 77.3 59.8 '2 5.4 6.3 8.0 2.7 '3 2.2 2.4 3.2 0.4 '4 0.5 0.0 1.7 0.0 '5 1.2 1.3 0.0 0.7 '6 0.0 0.0 0.0 0.0 '7 0.0 0.0 0.0 0.0 '8 0.0 0.0 0.0 2.4 '9 0.0 0.0 0.0 0.0 '10 0.0 0.0 0.0 0.0 11-15 0.0 0.0 0.0 0.0 16-20 0.0 0.0 0.0 0.0 21-50 3.3 0.0 0.0 0.0 51-100 0.0 7.3 0.0 0.0 101-150 0.0 0.0 0.0 0.0 151-200 0.0 0.0 0.0 0.0 201-500 0.0 0.0 0.0 0.0 501-1000 0.0 0.0 0.0 0.0 '1001+ 0.0 0.0 0.0 0.0