annotate tool_dependencies.xml @ 3:24009970003a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit a07cb10e840db61500822627bf8c8addf29d9f4f

<?xml version="1.0"?>
<tool_dependency>
    <package name="augustus" version="3.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/old/augustus-3.1.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="move_directory_files">
                    <source_directory>scripts</source_directory>
                    <destination_directory>$INSTALL_DIR/scripts</destination_directory>
                </action>
                <action type="move_directory_files">
                    <source_directory>config</source_directory>
                    <destination_directory>$INSTALL_DIR/config</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller.
It can be used as an ab initio program, which means it bases its prediction purely on the
sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources
such as EST, MS/MS, protein alignments and synthenic genomic alignments.
        </readme>
    </package>
</tool_dependency>