Mercurial > repos > iuc > package_augustus_3_1
comparison tool_dependencies.xml @ 3:24009970003a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_augustus_3_1 commit a07cb10e840db61500822627bf8c8addf29d9f4f
| author | iuc |
|---|---|
| date | Tue, 20 Oct 2015 14:19:29 -0400 |
| parents | 71bb72c60987 |
| children |
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| 2:71bb72c60987 | 3:24009970003a |
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| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="augustus" version="3.1"> | 3 <package name="augustus" version="3.1"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions> |
| 6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus-3.1.tar.gz</action> | 6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/old/augustus-3.1.tar.gz</action> |
| 7 <action type="shell_command">make</action> | 7 <action type="shell_command">make</action> |
| 8 <action type="move_directory_files"> | 8 <action type="move_directory_files"> |
| 9 <source_directory>bin</source_directory> | 9 <source_directory>bin</source_directory> |
| 10 <destination_directory>$INSTALL_DIR/bin</destination_directory> | 10 <destination_directory>$INSTALL_DIR/bin</destination_directory> |
| 11 </action> | 11 </action> |
| 18 <destination_directory>$INSTALL_DIR/config</destination_directory> | 18 <destination_directory>$INSTALL_DIR/config</destination_directory> |
| 19 </action> | 19 </action> |
| 20 <action type="set_environment"> | 20 <action type="set_environment"> |
| 21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable> | 21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable> |
| 22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | 22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> |
| 23 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable> | |
| 24 </action> | 23 </action> |
| 25 </actions> | 24 </actions> |
| 26 </install> | 25 </install> |
| 27 <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. | 26 <readme>AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. |
| 28 It can be used as an ab initio program, which means it bases its prediction purely on the | 27 It can be used as an ab initio program, which means it bases its prediction purely on the |