Mercurial > repos > iuc > package_blast_plus_2_2_26
comparison tool_dependencies.xml @ 2:9bc109967de1 draft
Typo and metadata URL correction
| author | peterjc |
|---|---|
| date | Wed, 30 Sep 2015 08:59:30 -0400 |
| parents | d3343fa55e9e |
| children | 47da1e409d70 |
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| 1:d3343fa55e9e | 2:9bc109967de1 |
|---|---|
| 43 <destination_directory>$INSTALL_DIR</destination_directory> | 43 <destination_directory>$INSTALL_DIR</destination_directory> |
| 44 </action> | 44 </action> |
| 45 </actions> | 45 </actions> |
| 46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | 46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> |
| 47 <actions> | 47 <actions> |
| 48 <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action> | 48 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> |
| 49 <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action> | 49 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> |
| 50 <action type="shell_command">uname</action> | 50 <action type="shell_command">uname</action> |
| 51 <action type="shell_command">arch</action> | 51 <action type="shell_command">arch</action> |
| 52 <action type="shell_command">echo Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!</action> | 52 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action> |
| 53 <action type="shell_command">false</action> | 53 <action type="shell_command">false</action> |
| 54 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | 54 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> |
| 55 </actions> | 55 </actions> |
| 56 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | 56 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> |
| 57 <action type="set_environment"> | 57 <action type="set_environment"> |
| 58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 59 </action> | 59 </action> |
| 60 </actions_group> | 60 </actions_group> |
| 61 </install> | 61 </install> |
| 62 <readme> | 62 <readme> |
| 63 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ | 63 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ |
| 64 binaries from the NCBI, which is faster than performing a local compliation, | 64 binaries from the NCBI, which is faster than performing a local compilation, |
| 65 avoids any issues with build dependencies, and is more reproducible between | 65 avoids any issues with build dependencies, and is more reproducible between |
| 66 installations as there is no variability from the compiler or library versions. | 66 installations as there is no variability from the compiler or library versions. |
| 67 | 67 |
| 68 For more details, see: | 68 For more details, see: |
| 69 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download | 69 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download |