Mercurial > repos > iuc > package_blast_plus_2_2_29
comparison tool_dependencies.xml @ 0:a2ec897aac2c draft
Uploaded definition based on that for BLAST+ 2.2.28
author | peterjc |
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date | Mon, 13 Jan 2014 11:29:52 -0500 |
parents | |
children | 0b75bc235e70 |
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-1:000000000000 | 0:a2ec897aac2c |
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1 <?xml version='1.0' encoding='utf-8'?> | |
2 <tool_dependency> | |
3 <package name="blast+" version="2.2.29"> | |
4 <install version="1.0"> | |
5 <actions_group> | |
6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> | |
7 <actions os="darwin" architecture="x86_64"> | |
8 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.29/ncbi-blast-2.2.29+-universal-macosx.tar.gz</action> | |
9 <action type="move_directory_files"> | |
10 <source_directory>bin</source_directory> | |
11 <destination_directory>$INSTALL_DIR</destination_directory> | |
12 </action> | |
13 </actions> | |
14 <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. --> | |
15 <actions os="darwin" architecture="i386"> | |
16 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.29/ncbi-blast-2.2.29+-universal-macosx.tar.gz</action> | |
17 <action type="move_directory_files"> | |
18 <source_directory>bin</source_directory> | |
19 <destination_directory>$INSTALL_DIR</destination_directory> | |
20 </action> | |
21 </actions> | |
22 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> | |
23 <actions os="linux" architecture="x86_64"> | |
24 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.29/ncbi-blast-2.2.29+-x64-linux.tar.gz</action> | |
25 <action type="move_directory_files"> | |
26 <source_directory>bin</source_directory> | |
27 <destination_directory>$INSTALL_DIR</destination_directory> | |
28 </action> | |
29 </actions> | |
30 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i386). --> | |
31 <actions os="linux" architecture="i386"> | |
32 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.29/ncbi-blast-2.2.29+-ia32-linux.tar.gz</action> | |
33 <action type="move_directory_files"> | |
34 <source_directory>bin</source_directory> | |
35 <destination_directory>$INSTALL_DIR</destination_directory> | |
36 </action> | |
37 </actions> | |
38 <!-- Download the binaries for BLAST+ compatible with 32-bit Linux (i686). --> | |
39 <actions os="linux" architecture="i686"> | |
40 <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.29/ncbi-blast-2.2.29+-ia32-linux.tar.gz</action> | |
41 <action type="move_directory_files"> | |
42 <source_directory>bin</source_directory> | |
43 <destination_directory>$INSTALL_DIR</destination_directory> | |
44 </action> | |
45 </actions> | |
46 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | |
47 <actions> | |
48 <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action> | |
49 <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action> | |
50 <action type="shell_command">uname</action> | |
51 <action type="shell_command">arch</action> | |
52 <action type="shell_command">echo Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!</action> | |
53 <action type="shell_command">false</action> | |
54 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
55 </actions> | |
56 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
57 <action type="set_environment"> | |
58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
59 </action> | |
60 </actions_group> | |
61 </install> | |
62 <readme> | |
63 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac OS X BLAST+ | |
64 binaries from the NCBI, which is faster than performing a local compliation, | |
65 avoids any issues with build dependencies, and is more reproducible between | |
66 installations as there is no variability from the compiler or library versions. | |
67 | |
68 For more details, see: | |
69 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download | |
70 </readme> | |
71 </package> | |
72 </tool_dependency> |