comparison tool_dependencies.xml @ 1:5dd2b68c7d04 draft default tip

planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_5_0/ commit 5e6ab3f9d02834b8be7cb93aced77956c51cdecc

0:d4f310163b85

    <package name="blast" version="2.5.0">
        <install version="1.0">
            <actions_group>
                <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
                <actions os="darwin" architecture="x86_64">
                    <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-universal-macosx.tar.gz -->
                    <action type="download_by_url" sha256sum="a446a18eec900cfd821a754bd984f6fe7076341801ece5ca40cbcddde7d0ca72" target_filename="ncbi-blast-2.5.0+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_darwin_all.tar.gz</action>
                    <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
                     </action>
                </actions>
                <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
                <actions os="darwin" architecture="i386">
                    <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-universal-macosx.tar.gz -->
                    <action type="download_by_url" sha256sum="a446a18eec900cfd821a754bd984f6fe7076341801ece5ca40cbcddde7d0ca72" target_filename="ncbi-blast-2.5.0+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_darwin_all.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
                <actions os="linux" architecture="x86_64">
                    <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-x64-linux.tar.gz -->
                    <action type="download_by_url" sha256sum="d7006968b527fc151db9d6e58c3ad3235f0b04d9769dcb1a49f3eeb9303b84ac" target_filename="ncbi-blast-2.5.0+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_linux_x64.tar.gz</action>

                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <actions>
                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
                    <action type="shell_command">uname</action>
                    <action type="shell_command">arch</action>
                    <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
                    <action type="shell_command">false</action>

Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
which is faster than performing a local compilation, avoids any issues with build
dependencies, and is more reproducible between installations as there is no
variability from the compiler or library versions.

Note that NCBI do not provide 32 bit Linux binaries anymore.

For more details, see:
http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
        </readme>
    </package>

1:5dd2b68c7d04

    <package name="blast" version="2.5.0">
        <install version="1.0">
            <actions_group>
                <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
                <actions os="darwin" architecture="x86_64">
                    <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-x64-macosx.tar.gz -->
                    <action type="download_by_url" sha256sum="a446a18eec900cfd821a754bd984f6fe7076341801ece5ca40cbcddde7d0ca72" target_filename="ncbi-blast-2.5.0+-x64-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_darwin_x64.tar.gz</action>
                    <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
                     </action>
                </actions>
                <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
                <actions os="linux" architecture="x86_64">
                    <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-x64-linux.tar.gz -->
                    <action type="download_by_url" sha256sum="d7006968b527fc151db9d6e58c3ad3235f0b04d9769dcb1a49f3eeb9303b84ac" target_filename="ncbi-blast-2.5.0+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.5.0_linux_x64.tar.gz</action>

                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <actions>
                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not supported."</action>
                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
                    <action type="shell_command">uname</action>
                    <action type="shell_command">arch</action>
                    <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
                    <action type="shell_command">false</action>

Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
which is faster than performing a local compilation, avoids any issues with build
dependencies, and is more reproducible between installations as there is no
variability from the compiler or library versions.

Note that NCBI do not provide any 32 bit binaries anymore.

For more details, see:
http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
        </readme>
    </package>