Mercurial > repos > iuc > package_blast_plus_2_7_1
comparison tool_dependencies.xml @ 0:2e9109a8924f draft default tip
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author | iuc |
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date | Mon, 30 Oct 2017 10:46:49 -0400 |
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-1:000000000000 | 0:2e9109a8924f |
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1 <?xml version='1.0' encoding='utf-8'?> | |
2 <tool_dependency> | |
3 <package name="blast" version="2.7.1"> | |
4 <install version="1.0"> | |
5 <actions_group> | |
6 <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. --> | |
7 <actions os="darwin" architecture="x86_64"> | |
8 <!-- Original URL https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-x64-macosx.tar.gz --> | |
9 <action type="download_by_url" sha256sum="1de96e0168771d02e1e4d5796e01c6f09073ce61f74aaba23c541750973554ea" target_filename="ncbi-blast-2.7.1+-x64-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.7.1_darwin_x64.tar.gz</action> | |
10 <action type="move_directory_files"> | |
11 <source_directory>bin</source_directory> | |
12 <destination_directory>$INSTALL_DIR</destination_directory> | |
13 </action> | |
14 </actions> | |
15 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> | |
16 <actions os="linux" architecture="x86_64"> | |
17 <!-- Original URL https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz --> | |
18 <action type="download_by_url" sha256sum="1df64183dcb1ee9493813b850bd83e7b83d3c04ea26f2ad7d2b5d0a6d53de917" target_filename="ncbi-blast-2.7.1+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.7.1_linux_x64.tar.gz</action> | |
19 <action type="move_directory_files"> | |
20 <source_directory>bin</source_directory> | |
21 <destination_directory>$INSTALL_DIR</destination_directory> | |
22 </action> | |
23 </actions> | |
24 <actions> | |
25 <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not supported."</action> | |
26 <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> | |
27 <action type="shell_command">uname</action> | |
28 <action type="shell_command">arch</action> | |
29 <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action> | |
30 <action type="shell_command">false</action> | |
31 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
32 </actions> | |
33 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
34 <action type="set_environment"> | |
35 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
36 <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> | |
37 </action> | |
38 </actions_group> | |
39 </install> | |
40 <readme> | |
41 Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI, | |
42 which is faster than performing a local compilation, avoids any issues with build | |
43 dependencies, and is more reproducible between installations as there is no | |
44 variability from the compiler or library versions. | |
45 | |
46 Note that NCBI do not provide any 32 bit binaries anymore. | |
47 | |
48 For more details, see: | |
49 http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download | |
50 </readme> | |
51 </package> | |
52 </tool_dependency> |