Mercurial > repos > iuc > package_blat_35x1
diff tool_dependencies.xml @ 0:5d0050880725 draft
initial uploaded
| author | iuc |
|---|---|
| date | Fri, 06 Sep 2013 03:44:34 -0400 |
| parents | |
| children | 963992658bf6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Sep 06 03:44:34 2013 -0400 @@ -0,0 +1,33 @@ +<tool_dependency> + <package name="blat" version="35x1"> + <install version="1.0"> + <actions> + <action type="download_binary"> + <url_template os="linux" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/linux/x86_64/blat_35x1</url_template> + <url_template os="darwin" architecture="i686">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/blat_35x1</url_template> + <url_template os="darwin" architecture="i386">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/blat_35x1</url_template> + <url_template os="darwin" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/x86_64/blat_35x1</url_template> + </action> + + <action type="move_file"> + <source>$INSTALL_DIR/blat_35x1</source> + <destination>$INSTALL_DIR/blat</destination> + </action> + <action type="chmod"> + <file mode="755">$INSTALL_DIR/blat</file> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="append_to">$INSTALL_DIR</environment_variable> + <environment_variable name="BLAT_PATH" action="append_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + blat programm from the UCSC. http://genome.ucsc.edu/FAQ/FAQblat.html + + Please note that the Blat source and executables are freely available for + academic, nonprofit and personal use. Commercial licensing information is + available on the Kent Informatics website (http://www.kentinformatics.com/). + </readme> + </package> +</tool_dependency>