Mercurial > repos > iuc > package_blat_35x1
view tool_dependencies.xml @ 3:b355179ea459 draft
Uploaded
author | bgruening |
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date | Wed, 29 Jan 2014 16:13:18 -0500 |
parents | 84c54f1fa280 |
children | cc0f4b49b6f1 |
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<tool_dependency> <package name="blat" version="35x1"> <install version="1.0"> <actions> <action type="download_binary"> <url_template os="linux" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</url_template> <url_template os="darwin" architecture="i686">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/blat/blat</url_template> <url_template os="darwin" architecture="i386">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/blat/blat</url_template> <url_template os="darwin" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blat/blat</url_template> </action> <action type="move_file"> <source>$INSTALL_DIR/blat</source> <destination>$INSTALL_DIR/blat</destination> </action> <action type="chmod"> <file mode="755">$INSTALL_DIR/blat</file> </action> <action type="set_environment"> <environment_variable name="PATH" action="append_to">$INSTALL_DIR</environment_variable> <environment_variable name="BLAT_PATH" action="append_to">$INSTALL_DIR</environment_variable> </action> <!-- Alternative version from Nicola Soranzo. <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action> <action type="shell_command">export MACHTYPE=`uname -m` && export HOME=$INSTALL_DIR && mkdir -p $HOME/bin/$MACHTYPE && make</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable> </action> --> </actions> </install> <readme> BLAT sequence aligner from the UCSC: http://genome.ucsc.edu/FAQ/FAQblat.html Git development repository: http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git Please note that the BLAT source and executables are freely available for academic, nonprofit and personal use. Commercial licensing information is available on the Kent Informatics website (http://www.kentinformatics.com/). </readme> </package> </tool_dependency>