# HG changeset patch
# User iuc
# Date 1378453474 14400
# Node ID 5d0050880725a56545780b86ef70f7a744113540

initial uploaded

diff -r 000000000000 -r 5d0050880725 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Sep 06 03:44:34 2013 -0400
@@ -0,0 +1,33 @@
+<tool_dependency>
+    <package name="blat" version="35x1">
+        <install version="1.0">
+            <actions>
+                <action type="download_binary">
+                    <url_template os="linux" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/linux/x86_64/blat_35x1</url_template>
+                    <url_template os="darwin" architecture="i686">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/blat_35x1</url_template>
+                    <url_template os="darwin" architecture="i386">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/i386/blat_35x1</url_template>
+                    <url_template os="darwin" architecture="x86_64">https://github.com/bgruening/download_store/raw/master/ucsc/darwin/x86_64/blat_35x1</url_template>
+                </action>
+
+                <action type="move_file">
+                    <source>$INSTALL_DIR/blat_35x1</source>
+                    <destination>$INSTALL_DIR/blat</destination>
+                </action>
+                <action type="chmod">
+                    <file mode="755">$INSTALL_DIR/blat</file>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="append_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="BLAT_PATH" action="append_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        blat programm from the UCSC. http://genome.ucsc.edu/FAQ/FAQblat.html
+
+        Please note that the Blat source and executables are freely available for
+        academic, nonprofit and personal use. Commercial licensing information is
+        available on the Kent Informatics website (http://www.kentinformatics.com/).
+        </readme>
+    </package>
+</tool_dependency>