Mercurial > repos > iuc > package_bowtie_2_2_6
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 63a05b81e68b855453a26161d55a690354a595ef
author | iuc |
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date | Thu, 17 Dec 2015 09:51:28 -0500 |
parents | 6d6cca69a34a |
children |
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<?xml version="1.0"?> <tool_dependency> <package name="bowtie2" version="2.2.6"> <install version="1.0"> <actions_group> <actions os="linux" architecture="x86_64"> <action md5sum="074884c2989437491685cfdec649d424" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-linux-x86_64.zip</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR/bin/</destination_directory> </action> </actions> <actions os="darwin" architecture="x86_64"> <action md5sum="2ff07b1358844bda4b2b1055507fee5b" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-macos-x86_64.zip</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR/bin/</destination_directory> </action> </actions> <actions> <action md5sum="6a67cf80f4551e24c5e1430a2b2e305a" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-source.zip</action> <action type="shell_command">make</action> <action type="move_file"> <source>bowtie2</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="move_file"> <source>bowtie2-build</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="move_file"> <source>bowtie2-inspect</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="move_file"> <source>bowtie</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="move_file"> <source>bowtie-build</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="move_file"> <source>bowtie-inspect</source> <destination>$INSTALL_DIR/bin</destination> </action> </actions> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions_group> </install> <readme></readme> </package> </tool_dependency>