Mercurial > repos > iuc > package_cd_hit_auxtools_0_5_2012_03_07_fix_dan

changeset 0:d0db9d974498 draft default tip

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Uploaded
author iuc
date Wed, 29 Apr 2015 12:06:32 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 55 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Apr 29 12:06:32 2015 -0400
@@ -0,0 +1,55 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="cd-hit-auxtools" version="0.5-2012-03-07-fix-dan-gh-0.0.1">
+        <install version="1.0">
+            <actions_group>
+                <!--
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/cd-hit-auxtools/cd-hit-auxtools-0.5-2012-03-07-fix-dan-gh-0.0.1-Linux-x86_64.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+                <actions architecture="i386" os="linux">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/i386/cd-hit-auxtools/cd-hit-auxtools-0.5-2012-03-07-fix-dan-gh-0.0.1-Linux-i686.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+                <actions architecture="x86_64" os="darwin">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/cd-hit-auxtools/cd-hit-auxtools-0.5-2012-03-07-fix-dan-gh-0.0.1-Darwin-x86_64.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+                -->
+                <actions>
+                    <action type="shell_command">git clone https://github.com/blankenberg/cd-hit-auxtools.git</action>
+                    <action type="shell_command">git checkout 09dcec33396bf8e75a0584625bdc80bbb5acdc30</action>
+                    <action type="shell_command">make</action>
+                    <action type="move_file">
+                        <source>cd-hit-dup</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>cd-hit-lap</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>read-linker</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+Builds and installs cd-hit-auxtools including cd-hit-dup, cd-hit-lap, and read-linker.
+        </readme>
+    </package>
+</tool_dependency>
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