Mercurial > repos > iuc > package_cummerbund_2_8_2
comparison tool_dependencies.xml @ 2:d9d166e54a21 draft
Download all R libraries from depot.galaxyproject.org
author | devteam |
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date | Wed, 07 Jan 2015 15:58:28 -0500 |
parents | 271dd1fcbb47 |
children | f18bcdb8c6c5 |
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1:271dd1fcbb47 | 2:d9d166e54a21 |
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8 <actions> | 8 <actions> |
9 <action type="setup_r_environment"> | 9 <action type="setup_r_environment"> |
10 <repository changeset_revision="7cb487a32bde" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | 10 <repository changeset_revision="7cb487a32bde" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
11 <package name="R" version="3.1.2" /> | 11 <package name="R" version="3.1.2" /> |
12 </repository> | 12 </repository> |
13 <package>http://cran.r-project.org/src/contrib/DBI_0.3.1.tar.gz</package> | 13 <package>https://depot.galaxyproject.org/package/noarch/DBI_0.3.1.tar.gz</package> |
14 <package>http://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package> | 14 <package>https://depot.galaxyproject.org/package/noarch/bitops_1.0-6.tar.gz</package> |
15 <package>http://cran.r-project.org/src/contrib/RCurl_1.95-4.5.tar.gz</package> | 15 <package>https://depot.galaxyproject.org/package/noarch/RCurl_1.95-4.5.tar.gz</package> |
16 <package>http://cran.r-project.org/src/contrib/XML_3.98-1.1.tar.gz</package> | 16 <package>https://depot.galaxyproject.org/package/noarch/XML_3.98-1.1.tar.gz</package> |
17 <package>http://cran.r-project.org/src/contrib/RSQLite_1.0.0.tar.gz</package> | 17 <package>https://depot.galaxyproject.org/package/noarch/RSQLite_1.0.0.tar.gz</package> |
18 <package>https://depot.galaxyproject.org/package/noarch/digest_0.6.7.tar.gz</package> | 18 <package>https://depot.galaxyproject.org/package/noarch/digest_0.6.7.tar.gz</package> |
19 <package>http://cran.r-project.org/src/contrib/Rcpp_0.11.3.tar.gz</package> | 19 <package>https://depot.galaxyproject.org/package/noarch/Rcpp_0.11.3.tar.gz</package> |
20 <package>http://cran.r-project.org/src/contrib/plyr_1.8.1.tar.gz</package> | 20 <package>https://depot.galaxyproject.org/package/noarch/plyr_1.8.1.tar.gz</package> |
21 <package>http://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package> | 21 <package>https://depot.galaxyproject.org/package/noarch/gtable_0.1.2.tar.gz</package> |
22 <package>http://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package> | 22 <package>https://depot.galaxyproject.org/package/noarch/proto_0.3-10.tar.gz</package> |
23 <package>http://cran.r-project.org/src/contrib/stringr_0.6.2.tar.gz</package> | 23 <package>https://depot.galaxyproject.org/package/noarch/stringr_0.6.2.tar.gz</package> |
24 <package>http://cran.r-project.org/src/contrib/reshape2_1.4.1.tar.gz</package> | 24 <package>https://depot.galaxyproject.org/package/noarch/reshape2_1.4.1.tar.gz</package> |
25 <package>http://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package> | 25 <package>https://depot.galaxyproject.org/package/noarch/RColorBrewer_1.1-2.tar.gz</package> |
26 <package>http://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package> | 26 <package>https://depot.galaxyproject.org/package/noarch/dichromat_2.0-0.tar.gz</package> |
27 <package>http://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package> | 27 <package>https://depot.galaxyproject.org/package/noarch/labeling_0.3.tar.gz</package> |
28 <package>http://cran.r-project.org/src/contrib/colorspace_1.2-4.tar.gz</package> | 28 <package>https://depot.galaxyproject.org/package/noarch/colorspace_1.2-4.tar.gz</package> |
29 <package>http://cran.r-project.org/src/contrib/munsell_0.4.2.tar.gz</package> | 29 <package>https://depot.galaxyproject.org/package/noarch/munsell_0.4.2.tar.gz</package> |
30 <package>http://cran.r-project.org/src/contrib/scales_0.2.4.tar.gz</package> | 30 <package>https://depot.galaxyproject.org/package/noarch/scales_0.2.4.tar.gz</package> |
31 <package>http://cran.r-project.org/src/contrib/ggplot2_1.0.0.tar.gz</package> | 31 <package>https://depot.galaxyproject.org/package/noarch/ggplot2_1.0.0.tar.gz</package> |
32 <package>http://cran.r-project.org/src/contrib/fastcluster_1.1.13.tar.gz</package> | 32 <package>https://depot.galaxyproject.org/package/noarch/fastcluster_1.1.13.tar.gz</package> |
33 <package>http://cran.r-project.org/src/contrib/plyr_1.8.1.tar.gz</package> | 33 <package>https://depot.galaxyproject.org/package/noarch/plyr_1.8.1.tar.gz</package> |
34 <package>http://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package> | 34 <package>https://depot.galaxyproject.org/package/noarch/getopt_1.20.0.tar.gz</package> |
35 <package>http://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package> | 35 <package>https://depot.galaxyproject.org/package/noarch/rjson_0.2.15.tar.gz</package> |
36 <package>http://cran.r-project.org/src/contrib/findpython_1.0.1.tar.gz</package> | 36 <package>https://depot.galaxyproject.org/package/noarch/findpython_1.0.1.tar.gz</package> |
37 <package>http://cran.r-project.org/src/contrib/argparse_1.0.1.tar.gz</package> | 37 <package>https://depot.galaxyproject.org/package/noarch/argparse_1.0.1.tar.gz</package> |
38 <package>http://cran.r-project.org/src/contrib/lattice_0.20-29.tar.gz</package> | 38 <package>https://depot.galaxyproject.org/package/noarch/lattice_0.20-29.tar.gz</package> |
39 <package>http://cran.r-project.org/src/contrib/latticeExtra_0.6-26.tar.gz</package> | 39 <package>https://depot.galaxyproject.org/package/noarch/latticeExtra_0.6-26.tar.gz</package> |
40 <package>http://cran.r-project.org/src/contrib/checkmate_1.5.1.tar.gz</package> | 40 <package>https://depot.galaxyproject.org/package/noarch/checkmate_1.5.1.tar.gz</package> |
41 <package>http://cran.r-project.org/src/contrib/BBmisc_1.8.tar.gz</package> | 41 <package>https://depot.galaxyproject.org/package/noarch/BBmisc_1.8.tar.gz</package> |
42 <package>http://cran.r-project.org/src/contrib/brew_1.0-6.tar.gz</package> | 42 <package>https://depot.galaxyproject.org/package/noarch/brew_1.0-6.tar.gz</package> |
43 <package>http://cran.r-project.org/src/contrib/fail_1.2.tar.gz</package> | 43 <package>https://depot.galaxyproject.org/package/noarch/fail_1.2.tar.gz</package> |
44 <package>http://cran.r-project.org/src/contrib/base64enc_0.1-2.tar.gz</package> | 44 <package>https://depot.galaxyproject.org/package/noarch/base64enc_0.1-2.tar.gz</package> |
45 <package>http://cran.r-project.org/src/contrib/sendmailR_1.2-1.tar.gz</package> | 45 <package>https://depot.galaxyproject.org/package/noarch/sendmailR_1.2-1.tar.gz</package> |
46 <package>http://cran.r-project.org/src/contrib/BatchJobs_1.5.tar.gz</package> | 46 <package>https://depot.galaxyproject.org/package/noarch/BatchJobs_1.5.tar.gz</package> |
47 <package>http://cran.r-project.org/src/contrib/iterators_1.0.7.tar.gz</package> | 47 <package>https://depot.galaxyproject.org/package/noarch/iterators_1.0.7.tar.gz</package> |
48 <package>http://cran.r-project.org/src/contrib/codetools_0.2-9.tar.gz</package> | 48 <package>https://depot.galaxyproject.org/package/noarch/codetools_0.2-9.tar.gz</package> |
49 <package>http://cran.r-project.org/src/contrib/foreach_1.4.2.tar.gz</package> | 49 <package>https://depot.galaxyproject.org/package/noarch/foreach_1.4.2.tar.gz</package> |
50 <package>http://cran.r-project.org/src/contrib/Formula_1.1-2.tar.gz</package> | 50 <package>https://depot.galaxyproject.org/package/noarch/Formula_1.1-2.tar.gz</package> |
51 <package>http://cran.r-project.org/src/contrib/survival_2.37-7.tar.gz</package> | 51 <package>https://depot.galaxyproject.org/package/noarch/survival_2.37-7.tar.gz</package> |
52 <package>http://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package> | 52 <package>https://depot.galaxyproject.org/package/noarch/acepack_1.3-3.3.tar.gz</package> |
53 <package>http://cran.r-project.org/src/contrib/Hmisc_3.14-6.tar.gz</package> | 53 <package>https://depot.galaxyproject.org/package/noarch/Hmisc_3.14-6.tar.gz</package> |
54 <package>http://cran.r-project.org/src/contrib/R.methodsS3_1.6.1.tar.gz</package> | 54 <package>https://depot.galaxyproject.org/package/noarch/R.methodsS3_1.6.1.tar.gz</package> |
55 <package>http://cran.r-project.org/src/contrib/matrixStats_0.12.2.tar.gz</package> | 55 <package>https://depot.galaxyproject.org/package/noarch/matrixStats_0.12.2.tar.gz</package> |
56 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.12.1.tar.gz</package> | 56 <package>https://depot.galaxyproject.org/package/noarch/BiocGenerics_0.12.1.tar.gz</package> |
57 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/S4Vectors_0.4.0.tar.gz</package> | 57 <package>https://depot.galaxyproject.org/package/noarch/S4Vectors_0.4.0.tar.gz</package> |
58 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/IRanges_2.0.1.tar.gz</package> | 58 <package>https://depot.galaxyproject.org/package/noarch/IRanges_2.0.1.tar.gz</package> |
59 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomeInfoDb_1.2.4.tar.gz</package> | 59 <package>https://depot.galaxyproject.org/package/noarch/GenomeInfoDb_1.2.4.tar.gz</package> |
60 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/XVector_0.6.0.tar.gz</package> | 60 <package>https://depot.galaxyproject.org/package/noarch/XVector_0.6.0.tar.gz</package> |
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62 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.12.0.tar.gz</package> | 62 <package>https://depot.galaxyproject.org/package/noarch/zlibbioc_1.12.0.tar.gz</package> |
63 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biostrings_2.34.1.tar.gz</package> | 63 <package>https://depot.galaxyproject.org/package/noarch/Biostrings_2.34.1.tar.gz</package> |
64 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Rsamtools_1.18.2.tar.gz</package> | 64 <package>https://depot.galaxyproject.org/package/noarch/Rsamtools_1.18.2.tar.gz</package> |
65 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.0.0.tar.gz</package> | 65 <package>https://depot.galaxyproject.org/package/noarch/BiocParallel_1.0.0.tar.gz</package> |
66 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.26.0.tar.gz</package> | 66 <package>https://depot.galaxyproject.org/package/noarch/Biobase_2.26.0.tar.gz</package> |
67 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/AnnotationDbi_1.28.1.tar.gz</package> | 67 <package>https://depot.galaxyproject.org/package/noarch/AnnotationDbi_1.28.1.tar.gz</package> |
68 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/biomaRt_2.22.0.tar.gz</package> | 68 <package>https://depot.galaxyproject.org/package/noarch/biomaRt_2.22.0.tar.gz</package> |
69 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicAlignments_1.2.1.tar.gz</package> | 69 <package>https://depot.galaxyproject.org/package/noarch/GenomicAlignments_1.2.1.tar.gz</package> |
70 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.26.2.tar.gz</package> | 70 <package>https://depot.galaxyproject.org/package/noarch/rtracklayer_1.26.2.tar.gz</package> |
71 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BSgenome_1.34.0.tar.gz</package> | 71 <package>https://depot.galaxyproject.org/package/noarch/BSgenome_1.34.0.tar.gz</package> |
72 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.18.3.tar.gz</package> | 72 <package>https://depot.galaxyproject.org/package/noarch/GenomicFeatures_1.18.3.tar.gz</package> |
73 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/VariantAnnotation_1.12.7.tar.gz</package> | 73 <package>https://depot.galaxyproject.org/package/noarch/VariantAnnotation_1.12.7.tar.gz</package> |
74 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/biovizBase_1.14.1.tar.gz</package> | 74 <package>https://depot.galaxyproject.org/package/noarch/biovizBase_1.14.1.tar.gz</package> |
75 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Gviz_1.10.3.tar.gz</package> | 75 <package>https://depot.galaxyproject.org/package/noarch/Gviz_1.10.3.tar.gz</package> |
76 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/cummeRbund_2.8.2.tar.gz</package> | 76 <package>https://depot.galaxyproject.org/package/noarch/cummeRbund_2.8.2.tar.gz</package> |
77 </action> | 77 </action> |
78 </actions> | 78 </actions> |
79 </install> | 79 </install> |
80 <readme> | 80 <readme> |
81 </readme> | 81 </readme> |