Mercurial > repos > iuc > package_cutadapt_1_8

changeset 0:980a47047f57 draft default tip

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Imported from capsule None
author iuc
date Wed, 15 Apr 2015 11:30:18 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 29 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Apr 15 11:30:18 2015 -0400
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="cython" version="0.20.1">
+      <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="cutadapt" version="1.8">
+      <install version="1.0">
+          <actions>
+              <action type="download_by_url">https://pypi.python.org/packages/source/c/cutadapt/cutadapt-1.8.tar.gz</action>
+                <action type="set_environment_for_install">
+                  <repository changeset_revision="c3a8c46fcb97" name="package_cython_0_20_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                      <package name="cython" version="0.20.1" />
+                    </repository>
+                </action>
+                <action type="shell_command">
+                        export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
+                        python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
+                    </action>
+                <action type="set_environment">
+                  <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="CUTADAPT_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>