annotate tool_dependencies.xml @ 3:2262bf4fa268 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 46d30b8d7e98e85078b3852ed1c4c15a6b4cc9d6
author iuc
date Fri, 13 May 2016 04:32:21 -0400
parents 56a98b4043fd
children e4a11a7d33d6
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.2.1">
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4 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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5 </package>
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6 <package name="libxml2" version="2.9.1">
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7 <repository changeset_revision="45b16a3ab504" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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8 </package>
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9 <package name="deseq2" version="1.10.0">
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10 <install version="1.0">
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11 <actions>
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12 <action type="setup_r_environment">
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13 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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14 <package name="R" version="3.2.1" />
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15 </repository>
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16 <!-- libxml2 needs to be sourced after R because R also was compiled against a different version of libxml2 -->
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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17 <repository changeset_revision="45b16a3ab504" name="package_libxml2_2_9_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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18 <package name="libxml2" version="2.9.1" />
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19 </repository>
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2262bf4fa268 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 46d30b8d7e98e85078b3852ed1c4c15a6b4cc9d6
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21 https://bioarchive.galaxyproject.org/BiocGenerics_0.17.1.tar.gz
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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22 </package>
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2262bf4fa268 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 46d30b8d7e98e85078b3852ed1c4c15a6b4cc9d6
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24 https://bioarchive.galaxyproject.org/S4Vectors_0.9.0.tar.gz
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25 </package>
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2262bf4fa268 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 46d30b8d7e98e85078b3852ed1c4c15a6b4cc9d6
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27 https://bioarchive.galaxyproject.org/IRanges_2.5.0.tar.gz
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28 </package>
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30 https://depot.galaxyproject.org/software/GenomeInfoDb/GenomeInfoDb_1.4.2_src_all.tar.gz
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31 </package>
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32 <package sha256sum="64ca661349d7e25d8f2363901fa452b55d05780913025a5856a7b635166c1925">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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33 https://depot.galaxyproject.org/software/XVector/XVector_0.8.0_src_all.tar.gz
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34 </package>
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35 <package sha256sum="7248c1113d799a2c37f73d0913e714ea443301bd95be664a1b799910145706c1">
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36 https://bioarchive.galaxyproject.org/GenomicRanges_1.23.0.tar.gz
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37 </package>
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38 <package sha256sum="68782050f5252c4246f1b5b335105eccf4c804d57a0cd41eb63a300f7e0241a0">
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39 https://depot.galaxyproject.org/software/Rcpp/Rcpp_0.12.0_src_all.tar.gz
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40 </package>
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41 <package sha256sum="f30155fdd4745b4c9a548a25a30b6ae5fe3e3f6cf4136ac485a75c90555934a0">
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42 https://depot.galaxyproject.org/software/RcppArmadillo/RcppArmadillo_0.5.500.2.0_src_all.tar.gz
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43 </package>
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44 <package sha256sum="5ba26e4432581482d3f2730c818555a1a87776b3e980d01e036f3b58db75c725">
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45 https://depot.galaxyproject.org/software/Biobase/Biobase_2.28.0_src_all.tar.gz
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46 </package>
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47 <package sha256sum="8ae36527124752f7af01eb84a55fa77716226b0e76dd03966b83d9583dcfbfd3">
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48 https://depot.galaxyproject.org/software/lambda.r/lambda.r_1.1.7_src_all.tar.gz
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49 </package>
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51 https://depot.galaxyproject.org/software/futile.options/futile.options_1.0.0_src_all.tar.gz
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52 </package>
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53 <package sha256sum="a1e485e943d288b92a2af3337b333be95d1b51246dd14be9f18ae5ce626894de">
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54 https://depot.galaxyproject.org/software/futile.logger/futile.logger_1.4.1_src_all.tar.gz
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55 </package>
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57 https://depot.galaxyproject.org/software/snow/snow_0.3-13_src_all.tar.gz
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58 </package>
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60 https://depot.galaxyproject.org/software/BiocParallel/BiocParallel_1.2.20_src_all.tar.gz
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61 </package>
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64 </package>
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66 https://depot.galaxyproject.org/software/RSQLite/RSQLite_1.0.0_src_all.tar.gz
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67 </package>
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69 https://depot.galaxyproject.org/software/AnnotationDbi/AnnotationDbi_1.30.1_src_all.tar.gz
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70 </package>
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iuc
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73 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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diff changeset
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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76 </package>
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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79 </package>
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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82 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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85 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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88 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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91 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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94 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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97 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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100 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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103 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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106 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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109 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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112 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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115 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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118 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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121 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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124 </package>
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iuc
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127 </package>
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iuc
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130 </package>
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iuc
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133 </package>
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iuc
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136 </package>
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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139 </package>
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iuc
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362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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145 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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146 <package sha256sum="0d1410f279d515a99c102824cc11ad2b024c86ee6af982cb45ea55739e06a09b">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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147 https://depot.galaxyproject.org/software/latticeExtra/latticeExtra_0.6-26_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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148 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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149 <package sha256sum="286671702b1ac4c4e918faa8b43cd7fe7561ce02ca5f62823be5f136d6674e0e">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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150 https://depot.galaxyproject.org/software/cluster/cluster_2.0.3_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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151 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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152 <package sha256sum="c5ddaed288d38118876a94c7aa5000dce0070b8d736dba12de64a9cb04dc2d85">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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153 https://depot.galaxyproject.org/software/rpart/rpart_4.1-10_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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154 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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155 <package sha256sum="979ed2fa4f9ec7c10e76188d41bc48f16fc90c3e59c3102714c85e53455ee54d">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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156 https://depot.galaxyproject.org/software/nnet/nnet_7.3-11_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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157 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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158 <package sha256sum="8320dd02202c74800b4c54a5d5f37b39c7a26ce443cf6c61093e1d469decae9f">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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159 https://depot.galaxyproject.org/software/acepack/acepack_1.3-3.3_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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160 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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161 <package sha256sum="d7401e5fcab9ce6e697d3520dbb8475e229c30341c0004c4fa489c82aa4447a4">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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162 https://depot.galaxyproject.org/software/foreign/foreign_0.8-66_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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163 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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164 <package sha256sum="27dc76f75eb08f99a4ab0f629a016250722368528ca6b515edb0b0339acbdea7">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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165 https://depot.galaxyproject.org/software/gridExtra/gridExtra_2.0.0_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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166 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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167 <package sha256sum="4edc3903da63e25d747f34c33abf3e4e9a1f250580bbbab39fb192469738a30d">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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168 https://depot.galaxyproject.org/software/Hmisc/Hmisc_3.16-0_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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169 </package>
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2262bf4fa268 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 46d30b8d7e98e85078b3852ed1c4c15a6b4cc9d6
iuc
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170 <package sha256sum="f60768da6c17e367510df1183753376ba0dd5d838ffe741c4cd6df4c17bd2ea0">
2262bf4fa268 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 46d30b8d7e98e85078b3852ed1c4c15a6b4cc9d6
iuc
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171 https://bioarchive.galaxyproject.org/SummarizedExperiment_0.2.0.tar.gz
2262bf4fa268 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 46d30b8d7e98e85078b3852ed1c4c15a6b4cc9d6
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172 </package>
0
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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173 <package sha256sum="9a823489b05f043ed6831d2045efbbaaec74aa61c0692f77893e59b7c7f3941f">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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174 https://bioarchive.galaxyproject.org/DESeq2_1.10.0.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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175 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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176 <!-- gplots dependency -->
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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177 <package sha256sum="fa2b8351223369a13f4e922f13e8c836459a9522c775a455afd5e2b18941bb34">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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178 https://depot.galaxyproject.org/software/gtools/gtools_3.4.1_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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179 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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180 <package sha256sum="554c973955a5d768359f56556effff6a7acd9e859d98ab13fa010df01fa16516">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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181 https://depot.galaxyproject.org/software/gdata/gdata_2.13.3_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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182 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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183 <package sha256sum="9b731397b7166dd54941fb0d2eac6df60c7a483b2e790f7eb15b4d7b79c9d69c">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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184 https://depot.galaxyproject.org/software/bitops/bitops_1.0-6_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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185 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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186 <package sha256sum="d32a73febf00930355cc00f3e4e71357412e0f163faae6a4bf7f552cacfe9af4">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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187 https://depot.galaxyproject.org/software/caTools/caTools_1.17.1_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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188 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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189 <package sha256sum="3f5fbda9201ea0dab4b5d30a8b857460a929502fc07e3fadc87445c746ce3fe5">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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190 https://depot.galaxyproject.org/software/KernSmooth/KernSmooth_2.23-13_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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191 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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192 <package sha256sum="8cb2ef4309f44eb049f0a8761d3b2aaf636e0ec2323942ec0c27fd8b4912abf9">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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193 https://depot.galaxyproject.org/software/gplots/gplots_2.14.2_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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194 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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195
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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196 <!-- wrapper dependency -->
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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197 <package sha256sum="f920baa2a0ef7082155c8b666851af0c77534af8b2ca0cd067e7d56fdf3ec501">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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198 https://depot.galaxyproject.org/software/getopt/getopt_1.20.0_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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199 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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200 <package sha256sum="93d417f4eddb6fb7d679fbabb934b155de3965cf3d3e5ab03af69af5a0123357">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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201 https://depot.galaxyproject.org/software/rjson/rjson_0.2.14_src_all.tar.gz
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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202 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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203 </action>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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204 <action type="set_environment">
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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205 <environment_variable action="set_to" name="DESEQ2_ROOT_PATH">$INSTALL_DIR</environment_variable>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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206 </action>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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207 </actions>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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208 </install>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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209 <readme>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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210 Differential gene expression analysis based on the negative binomial distribution.
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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211 http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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212 </readme>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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213 </package>
362a2224b1d2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_deseq2_1_10_0 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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214 </tool_dependency>