annotate tool_dependencies.xml @ 1:46615329ea72 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fatotwobit_35x1 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty

<tool_dependency>
    <package name="faToTwoBit" version="35x1">
        <install version="1.0">
            <actions_group>
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/ucsc/ucsc-312-Linux-x86_64.tar.gz</action>
                    <action type="shell_command">rm ucsc-312-Linux-x86_64.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <!--actions architecture="x86_64" os="darwin">
                    <action type="download_by_url"></action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                </actions-->
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable name="UCSC_TOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="FATOTWOBIT_ROOT_PATH" action="append_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
faToTwoBit: convert Fasta format sequence files to a dense randomly-accessable .2bit format that gfClient can use.
http://genome.ucsc.edu/goldenPath/help/blatSpec.html

This is a transitional package you should migrate to use packages with the name package_ucsc_tools_312 and upwards.

        </readme>
    </package>
</tool_dependency>