view tool_dependencies.xml @ 0:6c1cc41af15b draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit ef70edc74e958c32231f632339da032403d2a55a

<?xml version="1.0"?>
<tool_dependency>
    <package name="genometools" version="1.5.7">
        <install version="1.0">
            <actions>
                <action type="download_by_url" sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5">
                        https://depot.galaxyproject.org/software/genometools/genometools_1.5.7_src_all.tar.gz
                </action>
                <action type="shell_command">make 64bit=yes cairo=no prefix=$INSTALL_DIR install</action>
                <action type="make_directory">$INSTALL_DIR/lib/python</action>
                <action type="shell_command">cd gtpython &amp;&amp;  python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="GENOMETOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt.
It is based on a C library named “libgenometools” which consists of several modules.

For more details, see:
http://genometools.org/
        </readme>
    </package>
</tool_dependency>